CRAN Package Check Results for Package NMF

Last updated on 2020-02-20 23:47:35 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.22.0 32.84 669.01 701.85 OK
r-devel-linux-x86_64-debian-gcc 0.22.0 25.41 520.14 545.55 OK
r-devel-linux-x86_64-fedora-clang 0.22.0 811.34 NOTE
r-devel-linux-x86_64-fedora-gcc 0.22.0 830.83 NOTE
r-devel-windows-ix86+x86_64 0.22.0 47.00 649.00 696.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.22.0 13.00 8.00 21.00 ERROR
r-patched-linux-x86_64 0.22.0 23.41 605.00 628.41 OK
r-patched-solaris-x86 0.22.0 253.60 ERROR --no-vignettes
r-release-linux-x86_64 0.22.0 26.59 602.70 629.29 OK
r-release-windows-ix86+x86_64 0.22.0 48.00 625.00 673.00 OK
r-release-osx-x86_64 0.22.0 NOTE
r-oldrel-windows-ix86+x86_64 0.22.0 65.00 792.00 857.00 OK
r-oldrel-osx-x86_64 0.22.0 NOTE

Check Details

Version: 0.22.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.22.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 0.22.0
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavor: r-patched-solaris-x86

Version: 0.22.0
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: NMFfitX-class
    > ### Title: Virtual Class to Handle Results from Multiple Runs of NMF
    > ### Algorithms
    > ### Aliases: NMFfitX-class
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # generate a synthetic dataset with known classes
    > n <- 20; counts <- c(5, 2, 3);
    > V <- syntheticNMF(n, counts)
    >
    > # perform multiple runs of one algorithm (default is to keep only best fit)
    > res <- nmf(V, 3, nrun=3)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/16]
    Error in big.matrix(nrow = nrow(x), ncol = ncol(x), type = type, init = NULL, :
     Error: memory could not be allocated for instance of type big.matrix
    Calls: nmf ... gVariable -> <Anonymous> -> <Anonymous> -> big.matrix
    Timing stopped at: 0.03 0.033 0.077
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.22.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘doMPI’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64