aaSEA: Amino Acid Substitution Effect Analyser

Given a protein multiple sequence alignment, it is daunting task to assess the effects of substitutions along sequence length. 'aaSEA' package is intended to help researchers to rapidly analyse property changes caused by single, multiple and correlated amino acid substitutions in proteins. Methods for identification of co-evolving positions from multiple sequence alignment are as described in : Pelé et al., (2017) <doi:10.4172/2379-1764.1000250>.

Version: 1.1.0
Depends: R (≥ 3.4.0)
Imports: DT (≥ 0.4), networkD3 (≥ 0.4), shiny (≥ 1.0.5), shinydashboard (≥ 0.7.0), magrittr (≥ 1.5), Bios2cor (≥ 2.0), seqinr (≥ 3.4-5), plotly (≥ 4.7.1), Hmisc (≥ 4.1-1)
Suggests: knitr, rmarkdown
Published: 2019-11-09
Author: Raja Sekhara Reddy D.M
Maintainer: Raja Sekhara Reddy D.M <raja.duvvuru at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: aaSEA results

Downloads:

Reference manual: aaSEA.pdf
Vignettes: aaSEA Documentation
Package source: aaSEA_1.1.0.tar.gz
Windows binaries: r-devel: aaSEA_1.1.0.zip, r-devel-gcc8: aaSEA_1.1.0.zip, r-release: aaSEA_1.1.0.zip, r-oldrel: aaSEA_1.1.0.zip
OS X binaries: r-release: aaSEA_1.1.0.tgz, r-oldrel: aaSEA_1.1.0.tgz
Old sources: aaSEA archive

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