nimble: MCMC, Particle Filtering, and Programmable Hierarchical Modeling

A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.

Version: 0.8.0
Depends: R (≥ 3.1.2)
Imports: methods, igraph, coda, R6
Suggests: testthat
Published: 2019-06-02
Author: Perry de Valpine [aut], Christopher Paciorek [aut, cre], Daniel Turek [aut], Nick Michaud [aut], Cliff Anderson-Bergman [aut], Fritz Obermeyer [aut], Claudia Wehrhahn Cortes [aut] (Bayesian nonparametrics system), Abel Rodriguez [aut] (Bayesian nonparametrics system), Sally Paganin [aut] (reversible jump MCMC), Jagadish Babu [ctb] (code for the compilation system for an early version of NIMBLE), Lauren Ponisio [ctb] (contributions to the cross-validation code), Peter Sujan [ctb] (multivariate t distribution code)
Maintainer: Christopher Paciorek <paciorek at stat.berkeley.edu>
License: BSD_3_clause + file LICENSE | GPL-2 | GPL-3 [expanded from: BSD_3_clause + file LICENSE | GPL (≥ 2)]
Copyright: See COPYRIGHTS file.
nimble copyright details
URL: https://r-nimble.org
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: nimble citation info
Materials: README NEWS INSTALL
In views: Bayesian
CRAN checks: nimble results

Downloads:

Reference manual: nimble.pdf
Package source: nimble_0.8.0.tar.gz
Windows binaries: r-devel: nimble_0.8.0.zip, r-release: nimble_0.8.0.zip, r-oldrel: nimble_0.8.0.zip
OS X binaries: r-release: nimble_0.8.0.tgz, r-oldrel: nimble_0.8.0.tgz
Old sources: nimble archive

Reverse dependencies:

Reverse depends: BayesNSGP, bcgam, nimbleEcology
Reverse suggests: bridgesampling

Linking:

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