MCMC Algorithms for the Coalescent


[Up] [Top]

Documentation for package ‘coalescentMCMC’ version 0.4-1

Help Pages

cleanMCMCtrees Run MCMC for Coalescent Trees
coalescentMCMC Run MCMC for Coalescent Trees
dcoal Density Functions of Various Time-Dependent Coalescent Models
dcoal.linear Density Functions of Various Time-Dependent Coalescent Models
dcoal.step Density Functions of Various Time-Dependent Coalescent Models
dcoal.time Density Functions of Various Time-Dependent Coalescent Models
dcoal.time2 Density Functions of Various Time-Dependent Coalescent Models
EdgeLengthJittering Trees Operators for Running MCMC
getLastTree Run MCMC for Coalescent Trees
getMCMCstats Run MCMC for Coalescent Trees
getMCMCtrees Run MCMC for Coalescent Trees
NeighborhoodRearrangement Trees Operators for Running MCMC
saveMCMCtrees Run MCMC for Coalescent Trees
sim.coalescent Coalescent Simulation and Visualisation
TipInterchange Trees Operators for Running MCMC
treeOperators Trees Operators for Running MCMC