Model Evaluation and Analysis

Documentation for package ‘modEvA’ version 3.0

modEvA-package	Model Evaluation and Analysis
arrangePlots	Arrange plots
AUC	Area Under the Curve
confusionLabel	Label predictions according to their confusion matrix category
Dsquared	Proportion of deviance explained by a GLM
evaluate	Evaluate a GLM based on the elements of a confusion matrix.
evenness	Evenness in a binary vector.
getBins	Get bins of continuous values.
getModEqn	Get model equation
HLfit	Hosmer-Lemeshow goodness of fit
MESS	Multivariate Environmental Similarity Surfaces based on a data frame
MillerCalib	Miller's calibration satistics for logistic regression models
mod2obspred	Extract observed and predicted values from a model object.
modEvA	Model Evaluation and Analysis
modEvAmethods	Methods implemented in modEvA functions
multModEv	Multiple model evaluation
OA	Overlap Analysis
optiPair	Optimize the classification threshold for a pair of related model evaluation measures.
optiThresh	Optimize threshold for model evaluation.
plotGLM	Plot a generalized linear model
predDensity	Plot the density of predicted values for presences and absences.
predPlot	Plot predicted values for presences and absences, classified according to a prediction threshold.
prevalence	Prevalence
range01	Shrink or stretch a vector to make it range between 0 and 1
rotif.mods	Rotifer distribution models
RsqGLM	R-squared measures for GLMs
standard01	Standardize to 0-1 (or vice-versa)
threshMeasures	Threshold-based measures of model evaluation
varPart	Variation partitioning