AddParSettingProFAST | Add ProFAST model settings for a PRECASTObj object |
get_r2_mcfadden | Calcuate the the adjusted McFadden's pseudo R-square |
IntegrateSRTData | Integrate multiple SRT data into a Seurat object |
iscmeb_run | Fit an iSC-MEB model using specified multi-section embeddings |
model_set_ProFAST | Set parameters for ProFAST model |
ProFAST | Run ProFAST model for a PRECASTObj object |
ProFAST_run | (Varitional) ICM-EM algorithm for implementing ProFAST model |
ProFAST_structure | (Varitional) ICM-EM algorithm for implementing ProFAST model with structurized parameters |
RunHarmonyLouvain | Embedding alignment and clustering based on the embeddings from ProFAST |
RuniSCMEB | Fit an iSC-MEB model using the embeddings from ProFAST |
SelectHKgenes | Select housekeeping genes |
transferGeneNames | Transfer gene names from one fortmat to the other format |