Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction


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Documentation for package ‘ProFAST’ version 1.2

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AddParSettingProFAST Add ProFAST model settings for a PRECASTObj object
get_r2_mcfadden Calcuate the the adjusted McFadden's pseudo R-square
IntegrateSRTData Integrate multiple SRT data into a Seurat object
iscmeb_run Fit an iSC-MEB model using specified multi-section embeddings
model_set_ProFAST Set parameters for ProFAST model
ProFAST Run ProFAST model for a PRECASTObj object
ProFAST_run (Varitional) ICM-EM algorithm for implementing ProFAST model
ProFAST_structure (Varitional) ICM-EM algorithm for implementing ProFAST model with structurized parameters
RunHarmonyLouvain Embedding alignment and clustering based on the embeddings from ProFAST
RuniSCMEB Fit an iSC-MEB model using the embeddings from ProFAST
SelectHKgenes Select housekeeping genes
transferGeneNames Transfer gene names from one fortmat to the other format