Last updated on 2025-10-28 02:50:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 527.34 | 1361.98 | 1889.32 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 451.09 | 1127.48 | 1578.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 1500.00 | -111.29 | 1388.71 | WARN | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 1680.00 | 1094.22 | 2774.22 | OK | |
| r-devel-windows-x86_64 | 1.0.10 | 537.00 | 715.00 | 1252.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 576.57 | 1590.91 | 2167.48 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 573.06 | 1608.65 | 2181.71 | OK | |
| r-release-macos-arm64 | 1.0.10 | 149.00 | 144.00 | 293.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 298.00 | 303.00 | 601.00 | OK | |
| r-release-windows-x86_64 | 1.0.10 | 561.00 | 704.00 | 1265.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 165.00 | 150.00 | 315.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0.10 | 303.00 | 306.00 | 609.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.10 | 107.00 | 208.00 | 315.00 | NOTE |
Version: 1.0.10
Check: whether the package can be loaded with stated dependencies
Result: WARN
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840/gkwbetareg.o
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwbetareg_compile_20251025231840'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341/bkwreg.o
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/bkwreg_compile_20251025232341'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757/ekwreg.o
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/ekwreg_compile_20251025232757'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwmletmb -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwmletmb_compile_20251025233223'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650/gkwreg.o
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/gkwreg_compile_20251025233650'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
/usr/local/clang21/bin/clang++ -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang21/lib -L/usr/local/clang21/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang21/lib/clang/21/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.so /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135/kkwreg.o
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135'
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135'
make[1]: Leaving directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kkwreg_compile_20251025234135'
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kwreg_compile_20251025234631'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kwreg_compile_20251025234631/kwreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kwreg_compile_20251025234631/kwreg.o
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kwreg_compile_20251025234631/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/kwreg_compile_20251025234631/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
make[1]: *** wait: No child processes. Stop.
make[1]: *** Waiting for unfinished jobs....
make[1]: *** wait: No child processes. Stop.
using C++ compiler: ‘clang version 21.1.4’
make[1]: Entering directory '/tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/mcreg_compile_20251025234830'
/usr/local/clang21/bin/clang++ -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang21/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/mcreg_compile_20251025234830/mcreg.cpp -o /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/mcreg_compile_20251025234830/mcreg.o
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:209: /tmp/RtmpywcjOz/working_dir/RtmpNGwyU6/mcreg_compile_20251025234830/mcreg.o] Terminated
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.10
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
libs 9.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwbetareg_20251021230326/gkwbetareg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwbetareg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/bkwreg_20251021230326/bkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'bkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/ekwreg_20251021230326/ekwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'ekwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwmletmb_20251021230326/gkwmletmb.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwmletmb': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwreg_20251021230326/gkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kkwreg_20251021230326/kkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kwreg_20251021230326/kwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/mcreg_20251021230326/mcreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'mcreg': cannot change working directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-oldrel-windows-x86_64