Last updated on 2025-10-22 01:51:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.24 | 241.36 | 253.60 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.38 | 252.33 | 262.71 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 46.00 | 272.39 | 318.39 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 32.00 | 320.87 | 352.87 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.32 | 269.79 | 285.11 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.69 | 272.97 | 288.66 | OK | |
| r-release-macos-arm64 | 1.1.4 | 6.00 | 96.00 | 102.00 | OK | |
| r-release-macos-x86_64 | 1.1.4 | 13.00 | 204.00 | 217.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 189.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | 6.00 | 92.00 | 98.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.4 | 13.00 | 202.00 | 215.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 25.00 | 239.00 | 264.00 | OK |
Version: 1.1.4
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mapi.html:317:1 (mapi.Rd:174): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.493, system: 0.043, elapsed: 2.676 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.083, system: 0.069, elapsed: 14.524 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.016, elapsed: 0.338 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.822, system: 0.210, elapsed: 6.657 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.252 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.319, system: 0.365, elapsed: 25.474 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.512, system: 0.040, elapsed: 2.718 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.094, system: 0.115, elapsed: 15.559 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.016, elapsed: 0.319 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.888, system: 0.193, elapsed: 6.219 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.005, elapsed: 0.534 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.420, system: 0.392, elapsed: 26.308 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.544, system: 0.037, elapsed: 4.459 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.114, system: 0.082, elapsed: 24.232 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.013, elapsed: 0.438 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.756, system: 0.193, elapsed: 6.762 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.005, elapsed: 0.321 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.177, system: 0.248, elapsed: 1.481 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.597, system: 0.603, elapsed: 39.212 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.454, system: 0.032, elapsed: 2.331 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.111, system: 0.076, elapsed: 15.825 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.014, elapsed: 0.306 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.832, system: 0.200, elapsed: 6.361 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.006, elapsed: 0.260 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.222, system: 0.519, elapsed: 16.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.616, system: 0.875, elapsed: 42.351 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/150s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.505, system: 0.044, elapsed: 2.987 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.083, system: 0.085, elapsed: 15.506 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.347 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.862, system: 0.294, elapsed: 7.395 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.008, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.357, system: 0.471, elapsed: 27.596 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.640, system: 0.061, elapsed: 2.775 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.912, system: 0.115, elapsed: 12.284 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.015, elapsed: 0.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.680, system: 0.202, elapsed: 10.474 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.005, elapsed: 0.483 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.118, system: 0.439, elapsed: 27.358 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.531, system: 0.036, elapsed: 4.228 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.212, system: 0.167, elapsed: 26.871 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.192, system: 0.015, elapsed: 0.554 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.798, system: 0.279, elapsed: 11.144 seconds]
Computing values for grid cells...
... done. [user: 0.184, system: 0.018, elapsed: 0.501 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.121, system: 0.297, elapsed: 1.743 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.672, system: 0.851, elapsed: 46.870 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.570, system: 0.065, elapsed: 2.907 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.270, system: 0.237, elapsed: 15.231 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.194, system: 0.022, elapsed: 0.441 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.520, system: 0.175, elapsed: 4.359 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.003, elapsed: 0.167 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.104, system: 0.505, elapsed: 15.061 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.455, system: 1.047, elapsed: 39.376 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64