comparison.scheme either set to OVO
(default) which will compare each contrasts to each other. If it’s set
to OVA each contrast will be compared to rest.sv.number is added if user wants to
set the number of surrogate variables.verbose argument, default set to TRUE. I
think, I have implemented this in a really cool way!cinaRgenesets
added to vignette.heatmap_differential function to be able to plot the
heatmaps of a given comparison.show_comparisons is added to see the available
comparisons before you plot differential heatmaps.heatmap_plot is now renamed to
heatmap_var_peaks, which makes more sense.This version is even cooler, lol:
contrast
ordercinaR is published in CRAN repository!