CRAN Package Check Results for Package mlrCPO

Last updated on 2020-02-21 15:47:47 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.4-4 27.62 334.54 362.16 ERROR
r-devel-linux-x86_64-debian-gcc 0.3.4-4 25.35 252.75 278.10 OK
r-devel-linux-x86_64-fedora-clang 0.3.4-4 431.87 OK
r-devel-linux-x86_64-fedora-gcc 0.3.4-4 442.71 OK
r-devel-windows-ix86+x86_64 0.3.4-4 42.00 348.00 390.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.3.4-4 57.00 462.00 519.00 OK
r-patched-linux-x86_64 0.3.4-4 26.29 303.15 329.44 OK
r-patched-solaris-x86 0.3.4-4 400.10 WARN
r-release-linux-x86_64 0.3.4-4 26.10 302.11 328.21 OK
r-release-windows-ix86+x86_64 0.3.4-4 38.00 339.00 377.00 OK
r-release-osx-x86_64 0.3.4-4 WARN
r-oldrel-windows-ix86+x86_64 0.3.4-4 26.00 276.00 302.00 WARN
r-oldrel-osx-x86_64 0.3.4-4 WARN

Check Details

Version: 0.3.4-4
Check: tests
Result: ERROR
     Running 'run-core.R' [0s/1s]
     Running 'run-cpo.R' [38s/46s]
     Running 'run-meta.R' [9s/11s]
     Running 'run-zzzlint.R' [6s/7s]
    Running the tests in 'tests/run-cpo.R' failed.
    Complete output:
     > library(testthat)
     > ISTESTING = TRUE # nolint
     > test_check("mlrCPO", filter = "^_cpo_")
     Loading required package: mlrCPO
     Loading required package: ParamHelpers
     Loading required package: mlr
     'mlr' is in maintenance mode since July 2019. Future development
     efforts will go into its successor 'mlr3' (<https://mlr3.mlr-org.com>).
    
     Attaching package: 'BBmisc'
    
     The following object is masked from 'package:base':
    
     isFALSE
    
    
     Attaching package: 'rex'
    
     The following object is masked from 'package:testthat':
    
     matches
    
     -- 1. Failure: CPO Impute data frame (@test_cpo_impute.R#73) ------------------
     `data %>>% cpoImpute(target.cols = target, cols = list(x = imputeLearner("classif.naiveBayes")))` threw an error with unexpected message.
     Expected match: "Assertion on 'x' failed"
     Actual message: "Unsupported feature type (character) in column 'f'."
     Backtrace:
     1. mlrCPO::`internal%>>%`(...)
     2. mlrCPO:::`%>>%.data.frame`(...)
     3. mlrCPO:::`%>>%.Task`(cpo1, cpo2)
     5. mlrCPO:::applyCPO.CPO(cpo2, cpo1)
     7. mlrCPO:::callCPO.CPOPrimitive(...)
     10. mlrCPO:::cpo.trafo(...)
     12. mlr:::impute.data.frame(data, target.cols, ...)
     13. base::Map(...)
     14. base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
     18. mlr:::constructor(...)
     19. mlr:::makeSupervisedTask(...)
     20. mlr:::checkTaskData(...)
     21. base::Map(fun, cn = cols, x = data[cols])
     22. base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
     24. BBmisc::stopf(...)
    
     -- 2. Error: CPO Impute data frame --------------------------------------------
     Type of column f mismatches between training and test data.
     Backtrace:
     1. mlrCPO::`internal%>>%`(...)
     2. mlrCPO:::`%>>%.data.frame`(...)
     3. mlrCPO:::`%>>%.Task`(cpo1, cpo2)
     5. mlrCPO:::applyCPO.CPORetrafo(cpo2, cpo1)
     6. mlrCPO:::callCPORetrafoElement(cpo$element, task, TRUE, prev.inverter)
     7. mlrCPO:::prepareRetrafoInput(...)
     8. mlrCPO:::assertShapeConform(...)
     9. BBmisc::stopf(...)
    
     -- 3. Error: CPO Impute and reimpute task (@test_cpo_impute.R#159) ------------
     Unsupported feature type (character) in column 'f'.
     Backtrace:
     1. mlr::makeClassifTask(data = data, target = "z")
     2. mlr:::makeSupervisedTask(...)
     3. mlr:::checkTaskData(...)
     4. base::Map(fun, cn = cols, x = data[cols])
     5. base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
     7. BBmisc::stopf(...)
    
     -- 4. Error: cpoRegrResiduals with crr.train.residuals 'resample' -------------
     dim(X) must have a positive length
     Backtrace:
     1. mlrCPO::`internal%>>%`(...)
     2. mlrCPO:::`%>>%.Task`(...)
     4. mlrCPO:::applyCPO.CPO(cpo2, cpo1)
     6. mlrCPO:::callCPO.CPOPrimitive(...)
     9. mlrCPO:::cpo.trafo(data = data, target = target, ...)
     10. base::apply(pmat, 1, mean, na.rm = TRUE)
    
     == testthat results ===========================================================
     [ OK: 401 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 4 ]
     1. Failure: CPO Impute data frame (@test_cpo_impute.R#73)
     2. Error: CPO Impute data frame
     3. Error: CPO Impute and reimpute task (@test_cpo_impute.R#159)
     4. Error: cpoRegrResiduals with crr.train.residuals 'resample'
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.3.4-4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘FSelector’
Flavor: r-patched-solaris-x86

Version: 0.3.4-4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘a_1_getting_started.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_1_getting_started.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_1_getting_started.Rmd’
    
    --- re-building ‘a_2_mlrCPO_core.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_2_mlrCPO_core.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_2_mlrCPO_core.Rmd’
    
    --- re-building ‘a_3_all_CPOs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_3_all_CPOs.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_3_all_CPOs.Rmd’
    
    --- re-building ‘a_4_custom_CPOs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_4_custom_CPOs.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_4_custom_CPOs.Rmd’
    
    --- re-building ‘z_1_getting_started_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_1_getting_started_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_1_getting_started_terse.Rmd’
    
    --- re-building ‘z_2_mlrCPO_core_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_2_mlrCPO_core_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_2_mlrCPO_core_terse.Rmd’
    
    --- re-building ‘z_3_all_CPOs_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_3_all_CPOs_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_3_all_CPOs_terse.Rmd’
    
    --- re-building ‘z_4_custom_CPOs_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_4_custom_CPOs_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_4_custom_CPOs_terse.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘a_1_getting_started.Rmd’ ‘a_2_mlrCPO_core.Rmd’ ‘a_3_all_CPOs.Rmd’
     ‘a_4_custom_CPOs.Rmd’ ‘z_1_getting_started_terse.Rmd’
     ‘z_2_mlrCPO_core_terse.Rmd’ ‘z_3_all_CPOs_terse.Rmd’
     ‘z_4_custom_CPOs_terse.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.3.4-4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘a_1_getting_started.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_1_getting_started.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_1_getting_started.Rmd’
    
    --- re-building ‘a_2_mlrCPO_core.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_2_mlrCPO_core.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_2_mlrCPO_core.Rmd’
    
    --- re-building ‘a_3_all_CPOs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_3_all_CPOs.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_3_all_CPOs.Rmd’
    
    --- re-building ‘a_4_custom_CPOs.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_4_custom_CPOs.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘a_4_custom_CPOs.Rmd’
    
    --- re-building ‘z_1_getting_started_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_1_getting_started_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_1_getting_started_terse.Rmd’
    
    --- re-building ‘z_2_mlrCPO_core_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_2_mlrCPO_core_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_2_mlrCPO_core_terse.Rmd’
    
    --- re-building ‘z_3_all_CPOs_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_3_all_CPOs_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_3_all_CPOs_terse.Rmd’
    
    --- re-building ‘z_4_custom_CPOs_terse.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'z_4_custom_CPOs_terse.Rmd' failed with diagnostics:
    argument is of length zero
    --- failed re-building ‘z_4_custom_CPOs_terse.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘a_1_getting_started.Rmd’ ‘a_2_mlrCPO_core.Rmd’ ‘a_3_all_CPOs.Rmd’
     ‘a_4_custom_CPOs.Rmd’ ‘z_1_getting_started_terse.Rmd’
     ‘z_2_mlrCPO_core_terse.Rmd’ ‘z_3_all_CPOs_terse.Rmd’
     ‘z_4_custom_CPOs_terse.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.4-4
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_tibble.grouped_df', 'as_tibble.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped_df', 'distinct_.tbl_df', 'do.NULL', 'do.da [... truncated]
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.4-4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Quitting from lines 5-183 (./toc/vignettetoc.Rmd)
    Error: processing vignette 'a_1_getting_started.Rmd' failed with diagnostics:
    argument is of length zero
    Execution halted
Flavor: r-oldrel-osx-x86_64