CRAN Package Check Results for Package theseus

Last updated on 2020-04-05 23:47:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 26.19 232.61 258.80 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.0 0.52 2.40 2.92 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.0 310.77 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.0 309.92 ERROR
r-devel-windows-ix86+x86_64 0.1.0 7.00 6.00 13.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 0.1.0 6.00 7.00 13.00 ERROR
r-patched-linux-x86_64 0.1.0 20.45 223.57 244.02 ERROR
r-patched-solaris-x86 0.1.0 480.50 ERROR
r-release-linux-x86_64 0.1.0 21.14 290.34 311.48 NOTE
r-release-windows-ix86+x86_64 0.1.0 48.00 410.00 458.00 OK
r-release-osx-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 30.00 304.00 334.00 OK
r-oldrel-osx-x86_64 0.1.0 ERROR

Check Details

Version: 0.1.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'dada2'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [13s/14s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(theseus)
     >
     > test_check("theseus")
     -- 1. Error: rename_column_to_other returns taxa names of correct length (@test-
     attempting to coerce non-factor
     Backtrace:
     1. base::table(...)
     2. theseus:::rename_column_to_other(df, tax_level = "Phylum", top_taxa)
     3. base::as.character.factor(df[[tax_level]])
    
     == testthat results ===========================================================
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: rename_column_to_other returns taxa names of correct length (@test-helpers.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘gridExtra’ ‘splancs’ ‘tidyverse’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [17s/41s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(theseus)
     >
     > test_check("theseus")
     ── 1. Error: rename_column_to_other returns taxa names of correct length (@test-
     attempting to coerce non-factor
     Backtrace:
     1. base::table(...)
     2. theseus:::rename_column_to_other(df, tax_level = "Phylum", top_taxa)
     3. base::as.character.factor(df[[tax_level]])
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: rename_column_to_other returns taxa names of correct length (@test-helpers.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [17s/17s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(theseus)
     >
     > test_check("theseus")
     ── 1. Error: rename_column_to_other returns taxa names of correct length (@test-
     attempting to coerce non-factor
     Backtrace:
     1. base::table(...)
     2. theseus:::rename_column_to_other(df, tax_level = "Phylum", top_taxa)
     3. base::as.character.factor(df[[tax_level]])
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: rename_column_to_other returns taxa names of correct length (@test-helpers.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(theseus)
     >
     > test_check("theseus")
     ── 1. Error: rename_column_to_other returns taxa names of correct length (@test-
     attempting to coerce non-factor
     Backtrace:
     1. base::table(...)
     2. theseus:::rename_column_to_other(df, tax_level = "Phylum", top_taxa)
     3. base::as.character.factor(df[[tax_level]])
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: rename_column_to_other returns taxa names of correct length (@test-helpers.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [25s/26s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(theseus)
     >
     > test_check("theseus")
     ── 1. Error: rename_column_to_other returns taxa names of correct length (@test-
     attempting to coerce non-factor
     Backtrace:
     1. base::table(...)
     2. theseus:::rename_column_to_other(df, tax_level = "Phylum", top_taxa)
     3. base::as.character.factor(df[[tax_level]])
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 4 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
     1. Error: rename_column_to_other returns taxa names of correct length (@test-helpers.R#18)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ShortRead’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64