Tidy Tools for Paleoenvironmental Archives

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Documentation for package ‘tidypaleo’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

age_depth_as_sec_axis	Use an age depth model as a second ggplot axis
age_depth_exact	Age-depth model interpolators/extrapolators
age_depth_extrapolate	Age-depth model interpolators/extrapolators
age_depth_interpolate	Age-depth model interpolators/extrapolators
age_depth_model	Create age depth models
age_depth_na	Age-depth model interpolators/extrapolators
alta_lake_14C_ages	Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_210Pb_ages	Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_bacon_ages	Alta Lake Lead-210 and Carbon-14 Ages
alta_lake_geochem	Alta Lake Lead-210 and Carbon-14 Ages
as_trans_factory	Coerce and validate transforms and functions that produce them
biplot.nested_prcomp	Plot a nested analysis
facet_abundance	Facet for relative abundance data
facet_abundanceh	Facet for relative abundance data
facet_geochem_grid	Facet for relative abundance data
facet_geochem_gridh	Facet for relative abundance data
facet_geochem_wrap	Facet for relative abundance data
facet_geochem_wraph	Facet for relative abundance data
GeomAreah	Vertical ribbons and area plots
GeomColSegs	Useful geometries for strat diagrams
GeomColSegsh	Useful geometries for strat diagrams
GeomLineh	Useful geometries for strat diagrams
GeomRibbonh	Vertical ribbons and area plots
geom_areah	Vertical ribbons and area plots
geom_areah_exaggerate	Exaggerated geometries that do not train scales
geom_area_exaggerate	Exaggerated geometries that do not train scales
geom_col_segs	Useful geometries for strat diagrams
geom_col_segsh	Useful geometries for strat diagrams
geom_lineh	Connect observations in the vertical direction
geom_lineh_exaggerate	Exaggerated geometries that do not train scales
geom_line_exaggerate	Exaggerated geometries that do not train scales
geom_point_exaggerate	Exaggerated geometries that do not train scales
geom_ribbonh	Vertical ribbons and area plots
halifax_lakes_plottable	Halifax lakes water chemistry and top/bottom diatom counts
keji_lakes_plottable	Keji lakes core diatom counts
kellys_lake_ages	Kellys Lake Data
kellys_lake_cladocera	Kellys Lake Data
kellys_lake_geochem	Kellys Lake Data
label_geochem	Geochem facet labelers
label_species	Species facet labellers
layer_dendrogram	Add a dendrogram as a layer or facet
layer_scores	Add scores to a plot
layer_zone_boundaries	Add a dendrogram as a layer or facet
long_lake_14C_ages	Long Lake Carbon-14 Ages
long_lake_bacon_ages	Long Lake Carbon-14 Ages
long_lake_plottable	Long Lake Carbon-14 Ages
nested_analysis	Perform an analysis on a nested data matrix
nested_chclust_coniss	Nested (Constrained) hierarchical clustering
nested_chclust_conslink	Nested (Constrained) hierarchical clustering
nested_data	Prepare a parameter-long data frame for statistical analysis
nested_hclust	Nested (Constrained) hierarchical clustering
nested_prcomp	Nested Principal Components Analysis (PCA)
plot.age_depth_model	Plot an age depth model using base graphics
plot.nested_analysis	Plot a nested analysis
plot_layer_dendrogram	Add a dendrogram as a layer or facet
plot_layer_scores	Add scores to a plot
plot_nested_analysis	Plot a nested analysis
predict.age_depth_model	Predict age and depth values
predict_age	Predict age and depth values
predict_depth	Predict age and depth values
rotated_axis_labels	Common plot modifications for stratigraphic plots
rotated_facet_labels	Common plot modifications for stratigraphic plots
scale_x_abundance	Scales for relative abundance values
scale_x_age_depth	Age-depth scales
scale_x_depth_age	Age-depth scales
scale_y_abundance	Scales for relative abundance values
scale_y_age_depth	Age-depth scales
scale_y_depth_age	Age-depth scales
sequential_layer_facets	Change facet ordering behaviour
StatNestedHclust	Display a dendrogram as a ggplot2 layer
stat_nested_hclust	Display a dendrogram as a ggplot2 layer
theme_paleo	A Paleo-friendly ggplot2 theme
unnested_data	Prepare a parameter-long data frame for statistical analysis
validate_trans	Coerce and validate transforms and functions that produce them
validate_trans_factory	Coerce and validate transforms and functions that produce them