# EcoPhyloMapper

## Documentation for package ‘epm’ version 1.1.3

- DESCRIPTION file.

## Help Pages

epm-package | EcoPhyloMapper (epm)
addLegend | addLegend
addPhylo | addPhylo
addTraits | addTraits
betadiv_disparity | Map change in morphological disparity
betadiv_phylogenetic | Map phylogenetic turnover in species communities
betadiv_taxonomic | Map turnover in species communities
calcMeanShape | Calculate mean shape per grid cell
coordsFromEpmGrid | Retrieve coordinates from epmGrid
createEPMgrid | Create epmGrid object
customBetaDiv | Custom beta diversity metrics
customGridMetric | Custom grid metrics
dropSpecies | Drop species from epmGrid
DRstat | Calculate the DR statistic
epm | EcoPhyloMapper (epm)
epm-example | Eco Phylo Mapper datasets
epmToPhyloComm | Convert epmGrid to community matrix
expandSpeciesCellList | Expand species list
extractFromEpmGrid | Extract from epmGrid
faithPD | Calculate Faith's Phylogenetic Diversity
generateOccurrenceMatrix | Convert epmGrid to community matrix
getExtentOfList | Get extent of list
getMultiMapRamp | Extract min and max for multiple epmGrids
getSpPartialDisparities | Partial Disparity
gridMetrics | Grid Metrics
identify.epmGrid | Interactively identify species in epmGrid
interactiveExtent | Interactively choose extent
plot.epmGrid | Plot epmGrid
plotDispersionField | Plot dispersion fields
plotSpRange | plot a single species' range
rasterToGrid | Convert raster to sf grid
read.epmGrid | Read a epmGrid object
reduceToCommonTaxa | Subset epmGrid to shared taxa
singleSpCellIndex | Identify single-species cells
spCountIndex | Identify cells that have a certain number of taxa
summarizeEpmGridList | Summarize lists of epmGrid objects
summary.epmGrid | epmGrid summary
tableFromEpmGrid | Data table from epmGrid
tamiasEPM | Eco Phylo Mapper datasets
tamiasPolyList | Eco Phylo Mapper datasets
tamiasTraits | Eco Phylo Mapper datasets
tamiasTree | Eco Phylo Mapper datasets
tamiasTreeSet | Eco Phylo Mapper datasets
write.epmGrid | Save epmGrid object
writeEpmSpatial | Write epmGrid Spatial Object to Disk