Handling Vegetation Data Sets


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Documentation for package ‘vegtable’ version 0.1.7

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A B C D E H K L M N P R S T U V W misc

-- A --

add_releves Merge relevés from data frames into vegtable objects
add_releves-method Merge relevés from data frames into vegtable objects
add_releves<- Merge relevés from data frames into vegtable objects
add_releves<--method Merge relevés from data frames into vegtable objects
aggregate Aggregating information into a data frame
aggregate-method Aggregating information into a data frame
as.list Coerce an S4 object to a list
as.list-method Coerce an S4 object to a list
aspect_conv Conversion of aspect classes to azimuth
aspect_conv-data Conversion of aspect classes to azimuth

-- B --

braun_blanquet Conversion of Braun-Blanquet codes to cover percentage Cover values conversion as coverconvert object. Object of class coverconvert contains conversion tables usually from a categorical variable (a cover scale) to a numerical one (equivalent percentage cover value). Cover values are stored as range for each level in the scale (minimum and maximum cover value).
braun_blanquet-data Conversion of Braun-Blanquet codes to cover percentage Cover values conversion as coverconvert object. Object of class coverconvert contains conversion tables usually from a categorical variable (a cover scale) to a numerical one (equivalent percentage cover value). Cover values are stored as range for each level in the scale (minimum and maximum cover value).

-- C --

clean Clean orphaned records in vegtable object
clean-method Clean orphaned records in vegtable object
clean_once Clean orphaned records in vegtable object
count_taxa Count taxa included in vegtable objects
count_taxa-method Count taxa included in vegtable objects
count_taxa<- Count taxa included in vegtable objects
count_taxa<--method Count taxa included in vegtable objects
coverconvert Cover conversion tables
coverconvert-class Cover conversion tables
cover_trans Convert cover scales to percent cover
cover_trans-method Convert cover scales to percent cover
cross2db Generating cross tables from database lists
crosstable Generating cross tables from database lists
crosstable-method Generating cross tables from database lists

-- D --

df2vegtable Convert a data frame into a vegtable object.
df2vegtable-method Convert a data frame into a vegtable object.
dimnames Retrieve names of vegtable and coverconvert objects
dimnames-method Retrieve names of vegtable and coverconvert objects
dune_veg Dutch dune meadows as vegtable Data set from the package vegan::vegan, converted to a vegtable object.
dune_veg-data Dutch dune meadows as vegtable Data set from the package vegan::vegan, converted to a vegtable object.

-- E --

Extract Select or replace elements in objects

-- H --

header Retrieve or replace slot header in vegtable objects
header-method Retrieve or replace slot header in vegtable objects
header<- Retrieve or replace slot header in vegtable objects
header<--method Retrieve or replace slot header in vegtable objects

-- K --

Kenya_veg Vegetation-plots from Kenya
Kenya_veg-data Vegetation-plots from Kenya

-- L --

layers2samples Add information from slot 'layers' into slot 'samples'
layers2samples-method Add information from slot 'layers' into slot 'samples'

-- M --

make_cocktail Produce a Cocktail classification
make_cocktail-method Produce a Cocktail classification
match_names Search matchings between character and taxlist objects.
match_names-method Search matchings between character and taxlist objects.
merge_taxa Merge concepts
merge_taxa-method Merge concepts

-- N --

names Retrieve names of vegtable and coverconvert objects
names-method Retrieve names of vegtable and coverconvert objects
names<- Retrieve names of vegtable and coverconvert objects
names<--method Retrieve names of vegtable and coverconvert objects

-- P --

print-method Summary method for vegtable objects

-- R --

read_juice Exporting tables for Juice
relation2header Retrieve or replace relations in vegtable objects
relation2header-method Retrieve or replace relations in vegtable objects

-- S --

set_formula Produce a Cocktail classification
set_formula-method Produce a Cocktail classification
set_group Produce a Cocktail classification
set_group-method Produce a Cocktail classification
set_pseudo Produce a Cocktail classification
set_pseudo-method Produce a Cocktail classification
shaker Class containing Cocktail algorithms.
shaker-class Class containing Cocktail algorithms.
show-method Summary method for vegtable objects
subset Subset functions for vegtable objects
subset-method Subset functions for vegtable objects
summary Summary method for vegtable objects
summary-method Summary method for vegtable objects

-- T --

taxa2samples Merge concepts
taxa2samples-method Merge concepts
trait_proportion Statistics and proportion for taxon traits
trait_proportion-method Statistics and proportion for taxon traits
trait_stats Statistics and proportion for taxon traits
trait_stats-method Statistics and proportion for taxon traits
tv2coverconvert Import of vegetation data from Turboveg databases
tv2vegtable Import of vegetation data from Turboveg databases

-- U --

update_det Update by determined specimens
update_det-method Update by determined specimens
used_concepts Retrieve synonyms or taxon concepts used in a data set
used_concepts-method Retrieve synonyms or taxon concepts used in a data set
used_synonyms Retrieve synonyms or taxon concepts used in a data set
used_synonyms-method Retrieve synonyms or taxon concepts used in a data set

-- V --

vegtable Class vegtable.
vegtable-class Class vegtable.
vegtable_stat General statistics from vegtable objects
veg_relation Retrieve or replace relations in vegtable objects
veg_relation-method Retrieve or replace relations in vegtable objects
veg_relation<- Retrieve or replace relations in vegtable objects
veg_relation<--method Retrieve or replace relations in vegtable objects

-- W --

Wetlands Vegetation-plots from Tanzania
Wetlands-data Vegetation-plots from Tanzania
Wetlands_veg Vegetation-plots from Tanzania
write_juice Exporting tables for Juice
write_juice-method Exporting tables for Juice

-- misc --

$ Select or replace elements in objects
$-method Select or replace elements in objects
$<- Select or replace elements in objects
$<--method Select or replace elements in objects
[ Select or replace elements in objects
[-method Select or replace elements in objects
[<- Select or replace elements in objects
[<--method Select or replace elements in objects