CRAN Package Check Results for Package CAST

Last updated on 2024-12-30 01:48:22 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.2	17.93	503.93	521.86	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.2	12.13	454.36	466.49	NOTE
r-devel-linux-x86_64-fedora-clang	1.0.2			861.68	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0.2			663.78	ERROR
r-devel-windows-x86_64	1.0.2	18.00	465.00	483.00	ERROR
r-patched-linux-x86_64	1.0.2	22.00	646.19	668.19	OK
r-release-linux-x86_64	1.0.2	16.99	643.44	660.43	OK
r-release-macos-arm64	1.0.2			574.00	OK
r-release-macos-x86_64	1.0.2			721.00	OK
r-release-windows-x86_64	1.0.2	17.00	456.00	473.00	ERROR
r-oldrel-macos-arm64	1.0.2			557.00	OK
r-oldrel-macos-x86_64	1.0.2			1070.00	OK
r-oldrel-windows-x86_64	1.0.2	22.00	599.00	621.00	ERROR

Additional issues

clang-ASAN gcc-ASAN

Check Details

Version: 1.0.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: CreateSpacetimeFolds.Rd: trainControl bss.Rd: train, trainControl errorProfiles.Rd: rollapply ffs.Rd: train, trainControl global_validation.Rd: train, postResample, confusionMatrix nndm.Rd: trainControl Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘cast01-CAST-intro.Rmd’ using rmarkdown CAST package:CAST R Documentation '_<08>c_<08>a_<08>r_<08>e_<08>t' _<08>A_<08>p_<08>p_<08>l_<08>i_<08>c_<08>a_<08>t_<08>i_<08>o_<08>n_<08>s _<08>f_<08>o_<08>r _<08>S_<08>p_<08>a_<08>t_<08>i_<08>a_<08>l-_<08>T_<08>e_<08>m_<08>p_<08>o_<08>r_<08>a_<08>l _<08>M_<08>o_<08>d_<08>e_<08>l_<08>s _<08>D_<08>e_<08>s_<08>c_<08>r_<08>i_<08>p_<08>t_<08>i_<08>o_<08>n: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. CAST includes functions to improve spatial-temporal modelling tasks using 'caret'. It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate the performance of spatial prediction models and allows for spatial variable selection to selects suitable predictor variables in view to their contribution to the spatial model performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models by analysing the similarity between new data and training data. Methods are described in Meyer et al. (2018); Meyer et al. (2019); Meyer and Pebesma (2021); Milà et al. (2022); Meyer and Pebesma (2022); Linnenbrink et al. (2023). The package is described in detail in Meyer et al. (2024). _<08>D_<08>e_<08>t_<08>a_<08>i_<08>l_<08>s: 'caret' Applications for Spatio-Temporal models _<08>A_<08>u_<08>t_<08>h_<08>o_<08>r(_<08>s): Hanna Meyer, Carles Milà, Marvin Ludwig, Jan Linnenbrink, Fabian Schumacher _<08>R_<08>e_<08>f_<08>e_<08>r_<08>e_<08>n_<08>c_<08>e_<08>s: • Meyer, H., Ludwig, L., Milà, C., Linnenbrink, J., Schumacher, F. (2024): The CAST package for training and assessment of spatial prediction models in R. arXiv, https://doi.org/10.48550/arXiv.2404.06978. • Linnenbrink, J., Milà, C., Ludwig, M., and Meyer, H.: kNNDM: k-fold Nearest Neighbour Distance Matching Cross-Validation for map accuracy estimation, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-1308, 2023. • Milà, C., Mateu, J., Pebesma, E., Meyer, H. (2022): Nearest Neighbour Distance Matching Leave-One-Out Cross-Validation for map validation. Methods in Ecology and Evolution 00, 1– 13. • Meyer, H., Pebesma, E. (2022): Machine learning-based global maps of ecological variables and the challenge of assessing them. Nature Communications. 13. • Meyer, H., Pebesma, E. (2021): Predicting into unknown space? Estimating the area of applicability of spatial prediction models. Methods in Ecology and Evolution. 12, 1620– 1633. • Meyer, H., Reudenbach, C., Wöllauer, S., Nauss, T. (2019): Importance of spatial predictor variable selection in machine learning applications - Moving from data reproduction to spatial prediction. Ecological Modelling. 411, 108815. • Meyer, H., Reudenbach, C., Hengl, T., Katurji, M., Nauß, T. (2018): Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation. Environmental Modelling & Software 101: 1-9. _<08>S_<08>e_<08>e _<08>A_<08>l_<08>s_<08>o: Useful links: • <https://github.com/HannaMeyer/CAST> • <https://hannameyer.github.io/CAST/> • Report bugs at <https://github.com/HannaMeyer/CAST/issues/> Quitting from lines 73-78 [unnamed-chunk-5] (cast01-CAST-intro.Rmd) Error: processing vignette 'cast01-CAST-intro.Rmd' failed with diagnostics: unable to find an inherited method for function 'crop' for signature 'x = "NULL"' --- failed re-building ‘cast01-CAST-intro.Rmd’ --- re-building ‘cast02-plotgeodist.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-4-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49989 bytes Input file size = 50139 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35164 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35164 Output IDAT size = 35164 bytes (14825 bytes decrease) Output file size = 35242 bytes (14897 bytes = 29.71% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-5-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45401 bytes Input file size = 45539 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32754 Output IDAT size = 32754 bytes (12647 bytes decrease) Output file size = 32832 bytes (12707 bytes = 27.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27257 bytes Input file size = 27371 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 Output IDAT size = 23273 bytes (3984 bytes decrease) Output file size = 23351 bytes (4020 bytes = 14.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-2.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26431 bytes Input file size = 26545 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 Output IDAT size = 22231 bytes (4200 bytes decrease) Output file size = 22309 bytes (4236 bytes = 15.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-8-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49033 bytes Input file size = 49171 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36149 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36149 Output IDAT size = 36149 bytes (12884 bytes decrease) Output file size = 36227 bytes (12944 bytes = 26.32% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-9-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28787 bytes Input file size = 28901 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 Output IDAT size = 24327 bytes (4460 bytes decrease) Output file size = 24405 bytes (4496 bytes = 15.56% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-11-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48500 bytes Input file size = 48638 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35470 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35470 Output IDAT size = 35470 bytes (13030 bytes decrease) Output file size = 35548 bytes (13090 bytes = 26.91% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-12-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30344 bytes Input file size = 30458 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25283 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25283 Output IDAT size = 25283 bytes (5061 bytes decrease) Output file size = 25361 bytes (5097 bytes = 16.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-13-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52149 bytes Input file size = 52299 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37639 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37639 Output IDAT size = 37639 bytes (14510 bytes decrease) Output file size = 37717 bytes (14582 bytes = 27.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-14-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29635 bytes Input file size = 29749 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25107 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25107 Output IDAT size = 25107 bytes (4528 bytes decrease) Output file size = 25185 bytes (4564 bytes = 15.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-15-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29702 bytes Input file size = 29816 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 Output IDAT size = 24905 bytes (4797 bytes decrease) Output file size = 24983 bytes (4833 bytes = 16.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-16-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30754 bytes Input file size = 30868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26072 Output IDAT size = 26072 bytes (4682 bytes decrease) Output file size = 26150 bytes (4718 bytes = 15.28% decrease) Quitting from lines 242-246 [unnamed-chunk-17] (cast02-plotgeodist.Rmd) Error: processing vignette 'cast02-plotgeodist.Rmd' failed with diagnostics: attempt to set an attribute on NULL --- failed re-building ‘cast02-plotgeodist.Rmd’ --- re-building ‘cast03-CV.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/read data-1.png 480x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 83023 bytes Input file size = 83221 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70752 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70752 Output IDAT size = 70752 bytes (12271 bytes decrease) Output file size = 70830 bytes (12391 bytes = 14.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist density-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64333 bytes Input file size = 64495 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51967 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51967 Output IDAT size = 51967 bytes (12366 bytes decrease) Output file size = 52045 bytes (12450 bytes = 19.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist ecdf-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56131 bytes Input file size = 56281 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46637 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46637 Output IDAT size = 46637 bytes (9494 bytes decrease) Output file size = 46715 bytes (9566 bytes = 17.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24913 bytes Input file size = 25027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 Output IDAT size = 21166 bytes (3747 bytes decrease) Output file size = 21244 bytes (3783 bytes = 15.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40385 bytes Input file size = 40511 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33368 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33368 Output IDAT size = 33368 bytes (7017 bytes decrease) Output file size = 33446 bytes (7065 bytes = 17.44% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM pm25-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26211 bytes Input file size = 26325 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 Output IDAT size = 22450 bytes (3761 bytes decrease) Output file size = 22528 bytes (3797 bytes = 14.42% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM viz-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 65472 bytes Input file size = 65634 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51653 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51653 Output IDAT size = 51653 bytes (13819 bytes decrease) Output file size = 51731 bytes (13903 bytes = 21.18% decrease) --- finished re-building ‘cast03-CV.Rmd’ --- re-building ‘cast04-AOA-tutorial.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-3-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98710 bytes Input file size = 98932 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 Output IDAT size = 70391 bytes (28319 bytes decrease) Output file size = 70469 bytes (28463 bytes = 28.77% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-5-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32780 bytes Input file size = 32906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 Output IDAT size = 23954 bytes (8826 bytes decrease) Output file size = 24032 bytes (8874 bytes = 26.97% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-7-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32609 bytes Input file size = 32723 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 Output IDAT size = 24198 bytes (8411 bytes decrease) Output file size = 24276 bytes (8447 bytes = 25.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-10-1.png 847x288 pixels, 8 bits/pixel, 249 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4146 bytes Input file size = 4983 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3636 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 Output IDAT size = 3605 bytes (541 bytes decrease) Output file size = 3683 bytes (1300 bytes = 26.09% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-11-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59501 bytes Input file size = 59663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 Output IDAT size = 41746 bytes (17755 bytes decrease) Output file size = 41824 bytes (17839 bytes = 29.90% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-13-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21063 bytes Input file size = 21165 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 Output IDAT size = 18288 bytes (2775 bytes decrease) Output file size = 18366 bytes (2799 bytes = 13.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33014 bytes Input file size = 33140 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 Output IDAT size = 23074 bytes (9940 bytes decrease) Output file size = 23152 bytes (9988 bytes = 30.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27934 bytes Input file size = 28048 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 Output IDAT size = 19754 bytes (8180 bytes decrease) Output file size = 19832 bytes (8216 bytes = 29.29% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22164 bytes Input file size = 22266 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 Output IDAT size = 15521 bytes (6643 bytes decrease) Output file size = 15599 bytes (6667 bytes = 29.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16162 bytes Input file size = 16252 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 Output IDAT size = 13480 bytes (2682 bytes decrease) Output file size = 13558 bytes (2694 bytes = 16.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-15-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35326 bytes Input file size = 35452 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 Output IDAT size = 26976 bytes (8350 bytes decrease) Output file size = 27054 bytes (8398 bytes = 23.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31396 bytes Input file size = 31510 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 Output IDAT size = 21918 bytes (9478 bytes decrease) Output file size = 21996 bytes (9514 bytes = 30.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29936 bytes Input file size = 30050 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 Output IDAT size = 19689 bytes (10247 bytes decrease) Output file size = 19767 bytes (10283 bytes = 34.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15880 bytes Input file size = 15970 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 Output IDAT size = 13482 bytes (2398 bytes decrease) Output file size = 13560 bytes (2410 bytes = 15.09% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18415 bytes Input file size = 18517 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 Output IDAT size = 15620 bytes (2795 bytes decrease) Output file size = 15698 bytes (2819 bytes = 15.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-21-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39887 bytes Input file size = 40013 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32162 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32162 Output IDAT size = 32162 bytes (7725 bytes decrease) Output file size = 32240 bytes (7773 bytes = 19.43% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-1.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8861 bytes Input file size = 9731 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7974 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7974 Output IDAT size = 7974 bytes (887 bytes decrease) Output file size = 8052 bytes (1679 bytes = 17.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-2.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7607 bytes Input file size = 8465 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 Output IDAT size = 6771 bytes (836 bytes decrease) Output file size = 6849 bytes (1616 bytes = 19.09% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18083 bytes Input file size = 18185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 Output IDAT size = 15200 bytes (2883 bytes decrease) Output file size = 15278 bytes (2907 bytes = 15.99% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17300 bytes Input file size = 17402 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 Output IDAT size = 14424 bytes (2876 bytes decrease) Output file size = 14502 bytes (2900 bytes = 16.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-26-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53826 bytes Input file size = 53976 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 Output IDAT size = 41311 bytes (12515 bytes decrease) Output file size = 41389 bytes (12587 bytes = 23.32% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35364 bytes Input file size = 35490 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 Output IDAT size = 27359 bytes (8005 bytes decrease) Output file size = 27437 bytes (8053 bytes = 22.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33149 bytes Input file size = 33275 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 Output IDAT size = 25066 bytes (8083 bytes decrease) Output file size = 25144 bytes (8131 bytes = 24.44% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17346 bytes Input file size = 17448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 Output IDAT size = 15088 bytes (2258 bytes decrease) Output file size = 15166 bytes (2282 bytes = 13.08% decrease) --- finished re-building ‘cast04-AOA-tutorial.Rmd’ --- re-building ‘cast05-parallel.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17057 bytes Input file size = 17159 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 Output IDAT size = 11957 bytes (5100 bytes decrease) Output file size = 12035 bytes (5124 bytes = 29.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20542 bytes Input file size = 20644 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 Output IDAT size = 13867 bytes (6675 bytes decrease) Output file size = 13945 bytes (6699 bytes = 32.45% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17944 bytes Input file size = 18046 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 Output IDAT size = 11861 bytes (6083 bytes decrease) Output file size = 11939 bytes (6107 bytes = 33.84% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18793 bytes Input file size = 18895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 Output IDAT size = 13180 bytes (5613 bytes decrease) Output file size = 13258 bytes (5637 bytes = 29.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22951 bytes Input file size = 23053 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 Output IDAT size = 17072 bytes (5879 bytes decrease) Output file size = 17150 bytes (5903 bytes = 25.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6340 bytes Input file size = 6418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 Output IDAT size = 4892 bytes (1448 bytes decrease) Output file size = 4970 bytes (1448 bytes = 22.56% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 8 bits/pixel, 249 colors in palette Input IDAT size = 2533 bytes Input file size = 3370 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 Output IDAT size = 2167 bytes (366 bytes decrease) Output file size = 3004 bytes (366 bytes = 10.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7340 bytes Input file size = 7418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 Output IDAT size = 5548 bytes (1792 bytes decrease) Output file size = 5626 bytes (1792 bytes = 24.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7580 bytes Input file size = 7658 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 Output IDAT size = 5683 bytes (1897 bytes decrease) Output file size = 5761 bytes (1897 bytes = 24.77% decrease) --- finished re-building ‘cast05-parallel.Rmd’ SUMMARY: processing the following files failed: ‘cast01-CAST-intro.Rmd’ ‘cast02-plotgeodist.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘cast01-CAST-intro.Rmd’ using rmarkdown CAST package:CAST R Documentation '_<08>c_<08>a_<08>r_<08>e_<08>t' _<08>A_<08>p_<08>p_<08>l_<08>i_<08>c_<08>a_<08>t_<08>i_<08>o_<08>n_<08>s _<08>f_<08>o_<08>r _<08>S_<08>p_<08>a_<08>t_<08>i_<08>a_<08>l-_<08>T_<08>e_<08>m_<08>p_<08>o_<08>r_<08>a_<08>l _<08>M_<08>o_<08>d_<08>e_<08>l_<08>s _<08>D_<08>e_<08>s_<08>c_<08>r_<08>i_<08>p_<08>t_<08>i_<08>o_<08>n: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. CAST includes functions to improve spatial-temporal modelling tasks using 'caret'. It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate the performance of spatial prediction models and allows for spatial variable selection to selects suitable predictor variables in view to their contribution to the spatial model performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models by analysing the similarity between new data and training data. Methods are described in Meyer et al. (2018); Meyer et al. (2019); Meyer and Pebesma (2021); Milà et al. (2022); Meyer and Pebesma (2022); Linnenbrink et al. (2023). The package is described in detail in Meyer et al. (2024). _<08>D_<08>e_<08>t_<08>a_<08>i_<08>l_<08>s: 'caret' Applications for Spatio-Temporal models _<08>A_<08>u_<08>t_<08>h_<08>o_<08>r(_<08>s): Hanna Meyer, Carles Milà, Marvin Ludwig, Jan Linnenbrink, Fabian Schumacher _<08>R_<08>e_<08>f_<08>e_<08>r_<08>e_<08>n_<08>c_<08>e_<08>s: • Meyer, H., Ludwig, L., Milà, C., Linnenbrink, J., Schumacher, F. (2024): The CAST package for training and assessment of spatial prediction models in R. arXiv, https://doi.org/10.48550/arXiv.2404.06978. • Linnenbrink, J., Milà, C., Ludwig, M., and Meyer, H.: kNNDM: k-fold Nearest Neighbour Distance Matching Cross-Validation for map accuracy estimation, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-1308, 2023. • Milà, C., Mateu, J., Pebesma, E., Meyer, H. (2022): Nearest Neighbour Distance Matching Leave-One-Out Cross-Validation for map validation. Methods in Ecology and Evolution 00, 1– 13. • Meyer, H., Pebesma, E. (2022): Machine learning-based global maps of ecological variables and the challenge of assessing them. Nature Communications. 13. • Meyer, H., Pebesma, E. (2021): Predicting into unknown space? Estimating the area of applicability of spatial prediction models. Methods in Ecology and Evolution. 12, 1620– 1633. • Meyer, H., Reudenbach, C., Wöllauer, S., Nauss, T. (2019): Importance of spatial predictor variable selection in machine learning applications - Moving from data reproduction to spatial prediction. Ecological Modelling. 411, 108815. • Meyer, H., Reudenbach, C., Hengl, T., Katurji, M., Nauß, T. (2018): Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation. Environmental Modelling & Software 101: 1-9. _<08>S_<08>e_<08>e _<08>A_<08>l_<08>s_<08>o: Useful links: • <https://github.com/HannaMeyer/CAST> • <https://hannameyer.github.io/CAST/> • Report bugs at <https://github.com/HannaMeyer/CAST/issues/> Quitting from lines 73-78 [unnamed-chunk-5] (cast01-CAST-intro.Rmd) Error: processing vignette 'cast01-CAST-intro.Rmd' failed with diagnostics: unable to find an inherited method for function 'crop' for signature 'x = "NULL"' --- failed re-building ‘cast01-CAST-intro.Rmd’ --- re-building ‘cast02-plotgeodist.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-4-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50068 bytes Input file size = 50218 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35138 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35138 Output IDAT size = 35138 bytes (14930 bytes decrease) Output file size = 35216 bytes (15002 bytes = 29.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-5-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45459 bytes Input file size = 45597 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32761 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32761 Output IDAT size = 32761 bytes (12698 bytes decrease) Output file size = 32839 bytes (12758 bytes = 27.98% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27257 bytes Input file size = 27371 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 Output IDAT size = 23273 bytes (3984 bytes decrease) Output file size = 23351 bytes (4020 bytes = 14.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-2.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26431 bytes Input file size = 26545 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 Output IDAT size = 22231 bytes (4200 bytes decrease) Output file size = 22309 bytes (4236 bytes = 15.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-8-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49107 bytes Input file size = 49245 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36194 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36194 Output IDAT size = 36194 bytes (12913 bytes decrease) Output file size = 36272 bytes (12973 bytes = 26.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-9-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28789 bytes Input file size = 28903 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 Output IDAT size = 24327 bytes (4462 bytes decrease) Output file size = 24405 bytes (4498 bytes = 15.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-11-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48588 bytes Input file size = 48726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35499 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35499 Output IDAT size = 35499 bytes (13089 bytes decrease) Output file size = 35577 bytes (13149 bytes = 26.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-12-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30345 bytes Input file size = 30459 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25284 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25284 Output IDAT size = 25284 bytes (5061 bytes decrease) Output file size = 25362 bytes (5097 bytes = 16.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-13-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52199 bytes Input file size = 52349 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37667 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37667 Output IDAT size = 37667 bytes (14532 bytes decrease) Output file size = 37745 bytes (14604 bytes = 27.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-14-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29636 bytes Input file size = 29750 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25103 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25103 Output IDAT size = 25103 bytes (4533 bytes decrease) Output file size = 25181 bytes (4569 bytes = 15.36% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-15-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29704 bytes Input file size = 29818 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 Output IDAT size = 24905 bytes (4799 bytes decrease) Output file size = 24983 bytes (4835 bytes = 16.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-16-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30754 bytes Input file size = 30868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26071 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26071 Output IDAT size = 26071 bytes (4683 bytes decrease) Output file size = 26149 bytes (4719 bytes = 15.29% decrease) Quitting from lines 242-246 [unnamed-chunk-17] (cast02-plotgeodist.Rmd) Error: processing vignette 'cast02-plotgeodist.Rmd' failed with diagnostics: attempt to set an attribute on NULL --- failed re-building ‘cast02-plotgeodist.Rmd’ --- re-building ‘cast03-CV.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/read data-1.png 480x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82884 bytes Input file size = 83082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70268 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70268 Output IDAT size = 70268 bytes (12616 bytes decrease) Output file size = 70346 bytes (12736 bytes = 15.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist density-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64321 bytes Input file size = 64483 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52095 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52095 Output IDAT size = 52095 bytes (12226 bytes decrease) Output file size = 52173 bytes (12310 bytes = 19.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist ecdf-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56418 bytes Input file size = 56568 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46853 Output IDAT size = 46853 bytes (9565 bytes decrease) Output file size = 46931 bytes (9637 bytes = 17.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24913 bytes Input file size = 25027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 Output IDAT size = 21166 bytes (3747 bytes decrease) Output file size = 21244 bytes (3783 bytes = 15.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40691 bytes Input file size = 40817 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33262 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33262 Output IDAT size = 33262 bytes (7429 bytes decrease) Output file size = 33340 bytes (7477 bytes = 18.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM pm25-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26211 bytes Input file size = 26325 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 Output IDAT size = 22450 bytes (3761 bytes decrease) Output file size = 22528 bytes (3797 bytes = 14.42% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM viz-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 65654 bytes Input file size = 65828 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51750 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51750 Output IDAT size = 51750 bytes (13904 bytes decrease) Output file size = 51828 bytes (14000 bytes = 21.27% decrease) --- finished re-building ‘cast03-CV.Rmd’ --- re-building ‘cast04-AOA-tutorial.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-3-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98710 bytes Input file size = 98932 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 Output IDAT size = 70391 bytes (28319 bytes decrease) Output file size = 70469 bytes (28463 bytes = 28.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-5-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32780 bytes Input file size = 32906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 Output IDAT size = 23954 bytes (8826 bytes decrease) Output file size = 24032 bytes (8874 bytes = 26.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-7-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32609 bytes Input file size = 32723 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 Output IDAT size = 24198 bytes (8411 bytes decrease) Output file size = 24276 bytes (8447 bytes = 25.81% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-10-1.png 847x288 pixels, 8 bits/pixel, 249 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4146 bytes Input file size = 4983 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3636 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 Output IDAT size = 3605 bytes (541 bytes decrease) Output file size = 3683 bytes (1300 bytes = 26.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-11-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59501 bytes Input file size = 59663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 Output IDAT size = 41746 bytes (17755 bytes decrease) Output file size = 41824 bytes (17839 bytes = 29.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-13-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21063 bytes Input file size = 21165 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 Output IDAT size = 18288 bytes (2775 bytes decrease) Output file size = 18366 bytes (2799 bytes = 13.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33014 bytes Input file size = 33140 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 Output IDAT size = 23074 bytes (9940 bytes decrease) Output file size = 23152 bytes (9988 bytes = 30.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27934 bytes Input file size = 28048 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 Output IDAT size = 19754 bytes (8180 bytes decrease) Output file size = 19832 bytes (8216 bytes = 29.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22164 bytes Input file size = 22266 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 Output IDAT size = 15521 bytes (6643 bytes decrease) Output file size = 15599 bytes (6667 bytes = 29.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16162 bytes Input file size = 16252 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 Output IDAT size = 13480 bytes (2682 bytes decrease) Output file size = 13558 bytes (2694 bytes = 16.58% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-15-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35326 bytes Input file size = 35452 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 Output IDAT size = 26976 bytes (8350 bytes decrease) Output file size = 27054 bytes (8398 bytes = 23.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31396 bytes Input file size = 31510 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 Output IDAT size = 21918 bytes (9478 bytes decrease) Output file size = 21996 bytes (9514 bytes = 30.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29936 bytes Input file size = 30050 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 Output IDAT size = 19689 bytes (10247 bytes decrease) Output file size = 19767 bytes (10283 bytes = 34.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15880 bytes Input file size = 15970 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 Output IDAT size = 13482 bytes (2398 bytes decrease) Output file size = 13560 bytes (2410 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18415 bytes Input file size = 18517 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 Output IDAT size = 15620 bytes (2795 bytes decrease) Output file size = 15698 bytes (2819 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-21-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39888 bytes Input file size = 40014 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32161 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32161 Output IDAT size = 32161 bytes (7727 bytes decrease) Output file size = 32239 bytes (7775 bytes = 19.43% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-1.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8861 bytes Input file size = 9731 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7975 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7975 Output IDAT size = 7975 bytes (886 bytes decrease) Output file size = 8053 bytes (1678 bytes = 17.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-2.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7607 bytes Input file size = 8465 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 Output IDAT size = 6771 bytes (836 bytes decrease) Output file size = 6849 bytes (1616 bytes = 19.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18083 bytes Input file size = 18185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 Output IDAT size = 15200 bytes (2883 bytes decrease) Output file size = 15278 bytes (2907 bytes = 15.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17300 bytes Input file size = 17402 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 Output IDAT size = 14424 bytes (2876 bytes decrease) Output file size = 14502 bytes (2900 bytes = 16.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-26-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53826 bytes Input file size = 53976 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 Output IDAT size = 41311 bytes (12515 bytes decrease) Output file size = 41389 bytes (12587 bytes = 23.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35364 bytes Input file size = 35490 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 Output IDAT size = 27359 bytes (8005 bytes decrease) Output file size = 27437 bytes (8053 bytes = 22.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33149 bytes Input file size = 33275 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 Output IDAT size = 25066 bytes (8083 bytes decrease) Output file size = 25144 bytes (8131 bytes = 24.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17346 bytes Input file size = 17448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 Output IDAT size = 15088 bytes (2258 bytes decrease) Output file size = 15166 bytes (2282 bytes = 13.08% decrease) --- finished re-building ‘cast04-AOA-tutorial.Rmd’ --- re-building ‘cast05-parallel.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17057 bytes Input file size = 17159 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 Output IDAT size = 11957 bytes (5100 bytes decrease) Output file size = 12035 bytes (5124 bytes = 29.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20542 bytes Input file size = 20644 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 Output IDAT size = 13867 bytes (6675 bytes decrease) Output file size = 13945 bytes (6699 bytes = 32.45% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17944 bytes Input file size = 18046 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 Output IDAT size = 11861 bytes (6083 bytes decrease) Output file size = 11939 bytes (6107 bytes = 33.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18793 bytes Input file size = 18895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 Output IDAT size = 13180 bytes (5613 bytes decrease) Output file size = 13258 bytes (5637 bytes = 29.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22951 bytes Input file size = 23053 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 Output IDAT size = 17072 bytes (5879 bytes decrease) Output file size = 17150 bytes (5903 bytes = 25.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6340 bytes Input file size = 6418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 Output IDAT size = 4892 bytes (1448 bytes decrease) Output file size = 4970 bytes (1448 bytes = 22.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 8 bits/pixel, 249 colors in palette Input IDAT size = 2533 bytes Input file size = 3370 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 Output IDAT size = 2167 bytes (366 bytes decrease) Output file size = 3004 bytes (366 bytes = 10.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7340 bytes Input file size = 7418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 Output IDAT size = 5548 bytes (1792 bytes decrease) Output file size = 5626 bytes (1792 bytes = 24.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7580 bytes Input file size = 7658 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 Output IDAT size = 5683 bytes (1897 bytes decrease) Output file size = 5761 bytes (1897 bytes = 24.77% decrease) --- finished re-building ‘cast05-parallel.Rmd’ SUMMARY: processing the following files failed: ‘cast01-CAST-intro.Rmd’ ‘cast02-plotgeodist.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘cast01-CAST-intro.Rmd’ using rmarkdown CAST package:CAST R Documentation '_<08>c_<08>a_<08>r_<08>e_<08>t' _<08>A_<08>p_<08>p_<08>l_<08>i_<08>c_<08>a_<08>t_<08>i_<08>o_<08>n_<08>s _<08>f_<08>o_<08>r _<08>S_<08>p_<08>a_<08>t_<08>i_<08>a_<08>l-_<08>T_<08>e_<08>m_<08>p_<08>o_<08>r_<08>a_<08>l _<08>M_<08>o_<08>d_<08>e_<08>l_<08>s _<08>D_<08>e_<08>s_<08>c_<08>r_<08>i_<08>p_<08>t_<08>i_<08>o_<08>n: Supporting functionality to run 'caret' with spatial or spatial-temporal data. 'caret' is a frequently used package for model training and prediction using machine learning. CAST includes functions to improve spatial-temporal modelling tasks using 'caret'. It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate the performance of spatial prediction models and allows for spatial variable selection to selects suitable predictor variables in view to their contribution to the spatial model performance. CAST further includes functionality to estimate the (spatial) area of applicability of prediction models by analysing the similarity between new data and training data. Methods are described in Meyer et al. (2018); Meyer et al. (2019); Meyer and Pebesma (2021); Milà et al. (2022); Meyer and Pebesma (2022); Linnenbrink et al. (2023). The package is described in detail in Meyer et al. (2024). _<08>D_<08>e_<08>t_<08>a_<08>i_<08>l_<08>s: 'caret' Applications for Spatio-Temporal models _<08>A_<08>u_<08>t_<08>h_<08>o_<08>r(_<08>s): Hanna Meyer, Carles Milà, Marvin Ludwig, Jan Linnenbrink, Fabian Schumacher _<08>R_<08>e_<08>f_<08>e_<08>r_<08>e_<08>n_<08>c_<08>e_<08>s: • Meyer, H., Ludwig, L., Milà, C., Linnenbrink, J., Schumacher, F. (2024): The CAST package for training and assessment of spatial prediction models in R. arXiv, https://doi.org/10.48550/arXiv.2404.06978. • Linnenbrink, J., Milà, C., Ludwig, M., and Meyer, H.: kNNDM: k-fold Nearest Neighbour Distance Matching Cross-Validation for map accuracy estimation, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-1308, 2023. • Milà, C., Mateu, J., Pebesma, E., Meyer, H. (2022): Nearest Neighbour Distance Matching Leave-One-Out Cross-Validation for map validation. Methods in Ecology and Evolution 00, 1– 13. • Meyer, H., Pebesma, E. (2022): Machine learning-based global maps of ecological variables and the challenge of assessing them. Nature Communications. 13. • Meyer, H., Pebesma, E. (2021): Predicting into unknown space? Estimating the area of applicability of spatial prediction models. Methods in Ecology and Evolution. 12, 1620– 1633. • Meyer, H., Reudenbach, C., Wöllauer, S., Nauss, T. (2019): Importance of spatial predictor variable selection in machine learning applications - Moving from data reproduction to spatial prediction. Ecological Modelling. 411, 108815. • Meyer, H., Reudenbach, C., Hengl, T., Katurji, M., Nauß, T. (2018): Improving performance of spatio-temporal machine learning models using forward feature selection and target-oriented validation. Environmental Modelling & Software 101: 1-9. _<08>S_<08>e_<08>e _<08>A_<08>l_<08>s_<08>o: Useful links: • <https://github.com/HannaMeyer/CAST> • <https://hannameyer.github.io/CAST/> • Report bugs at <https://github.com/HannaMeyer/CAST/issues/> Quitting from lines 73-78 [unnamed-chunk-5] (cast01-CAST-intro.Rmd) Error: processing vignette 'cast01-CAST-intro.Rmd' failed with diagnostics: unable to find an inherited method for function 'crop' for signature 'x = "NULL"' --- failed re-building ‘cast01-CAST-intro.Rmd’ --- re-building ‘cast02-plotgeodist.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-4-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50068 bytes Input file size = 50218 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35138 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35138 Output IDAT size = 35138 bytes (14930 bytes decrease) Output file size = 35216 bytes (15002 bytes = 29.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-5-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45459 bytes Input file size = 45597 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32761 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32761 Output IDAT size = 32761 bytes (12698 bytes decrease) Output file size = 32839 bytes (12758 bytes = 27.98% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27257 bytes Input file size = 27371 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23273 Output IDAT size = 23273 bytes (3984 bytes decrease) Output file size = 23351 bytes (4020 bytes = 14.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-6-2.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26431 bytes Input file size = 26545 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22231 Output IDAT size = 22231 bytes (4200 bytes decrease) Output file size = 22309 bytes (4236 bytes = 15.96% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-8-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49107 bytes Input file size = 49245 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36194 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36194 Output IDAT size = 36194 bytes (12913 bytes decrease) Output file size = 36272 bytes (12973 bytes = 26.34% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-9-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28789 bytes Input file size = 28903 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24327 Output IDAT size = 24327 bytes (4462 bytes decrease) Output file size = 24405 bytes (4498 bytes = 15.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-11-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48588 bytes Input file size = 48726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35499 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35499 Output IDAT size = 35499 bytes (13089 bytes decrease) Output file size = 35577 bytes (13149 bytes = 26.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-12-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30345 bytes Input file size = 30459 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25284 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25284 Output IDAT size = 25284 bytes (5061 bytes decrease) Output file size = 25362 bytes (5097 bytes = 16.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-13-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52199 bytes Input file size = 52349 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37667 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37667 Output IDAT size = 37667 bytes (14532 bytes decrease) Output file size = 37745 bytes (14604 bytes = 27.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-14-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29636 bytes Input file size = 29750 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25103 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25103 Output IDAT size = 25103 bytes (4533 bytes decrease) Output file size = 25181 bytes (4569 bytes = 15.36% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-15-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29704 bytes Input file size = 29818 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24905 Output IDAT size = 24905 bytes (4799 bytes decrease) Output file size = 24983 bytes (4835 bytes = 16.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast02-plotgeodist_files/figure-html/unnamed-chunk-16-1.png 595x326 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30754 bytes Input file size = 30868 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26071 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26071 Output IDAT size = 26071 bytes (4683 bytes decrease) Output file size = 26149 bytes (4719 bytes = 15.29% decrease) Quitting from lines 242-246 [unnamed-chunk-17] (cast02-plotgeodist.Rmd) Error: processing vignette 'cast02-plotgeodist.Rmd' failed with diagnostics: attempt to set an attribute on NULL --- failed re-building ‘cast02-plotgeodist.Rmd’ --- re-building ‘cast03-CV.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/read data-1.png 480x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82884 bytes Input file size = 83082 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70268 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70268 Output IDAT size = 70268 bytes (12616 bytes decrease) Output file size = 70346 bytes (12736 bytes = 15.33% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist density-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64321 bytes Input file size = 64483 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52095 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52095 Output IDAT size = 52095 bytes (12226 bytes decrease) Output file size = 52173 bytes (12310 bytes = 19.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/geodist ecdf-1.png 576x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 56418 bytes Input file size = 56568 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46853 Output IDAT size = 46853 bytes (9565 bytes decrease) Output file size = 46931 bytes (9637 bytes = 17.04% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-1-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24913 bytes Input file size = 25027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21166 Output IDAT size = 21166 bytes (3747 bytes decrease) Output file size = 21244 bytes (3783 bytes = 15.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/NNDM LOO pm25-2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40691 bytes Input file size = 40817 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33262 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33262 Output IDAT size = 33262 bytes (7429 bytes decrease) Output file size = 33340 bytes (7477 bytes = 18.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM temp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27834 bytes Input file size = 27948 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23615 Output IDAT size = 23615 bytes (4219 bytes decrease) Output file size = 23693 bytes (4255 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM pm25-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26211 bytes Input file size = 26325 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22450 Output IDAT size = 22450 bytes (3761 bytes decrease) Output file size = 22528 bytes (3797 bytes = 14.42% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast03-CV_files/figure-html/kNNDM viz-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 65654 bytes Input file size = 65828 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51750 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51750 Output IDAT size = 51750 bytes (13904 bytes decrease) Output file size = 51828 bytes (14000 bytes = 21.27% decrease) --- finished re-building ‘cast03-CV.Rmd’ --- re-building ‘cast04-AOA-tutorial.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-3-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 98710 bytes Input file size = 98932 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 70391 Output IDAT size = 70391 bytes (28319 bytes decrease) Output file size = 70469 bytes (28463 bytes = 28.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-5-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32780 bytes Input file size = 32906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23954 Output IDAT size = 23954 bytes (8826 bytes decrease) Output file size = 24032 bytes (8874 bytes = 26.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-7-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32609 bytes Input file size = 32723 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24198 Output IDAT size = 24198 bytes (8411 bytes decrease) Output file size = 24276 bytes (8447 bytes = 25.81% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-10-1.png 847x288 pixels, 8 bits/pixel, 249 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4146 bytes Input file size = 4983 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3636 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3605 Output IDAT size = 3605 bytes (541 bytes decrease) Output file size = 3683 bytes (1300 bytes = 26.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-11-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59501 bytes Input file size = 59663 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41746 Output IDAT size = 41746 bytes (17755 bytes decrease) Output file size = 41824 bytes (17839 bytes = 29.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-13-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21063 bytes Input file size = 21165 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18288 Output IDAT size = 18288 bytes (2775 bytes decrease) Output file size = 18366 bytes (2799 bytes = 13.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33014 bytes Input file size = 33140 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23074 Output IDAT size = 23074 bytes (9940 bytes decrease) Output file size = 23152 bytes (9988 bytes = 30.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27934 bytes Input file size = 28048 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19754 Output IDAT size = 19754 bytes (8180 bytes decrease) Output file size = 19832 bytes (8216 bytes = 29.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22164 bytes Input file size = 22266 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15521 Output IDAT size = 15521 bytes (6643 bytes decrease) Output file size = 15599 bytes (6667 bytes = 29.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-14-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16162 bytes Input file size = 16252 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13480 Output IDAT size = 13480 bytes (2682 bytes decrease) Output file size = 13558 bytes (2694 bytes = 16.58% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-15-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35326 bytes Input file size = 35452 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26976 Output IDAT size = 26976 bytes (8350 bytes decrease) Output file size = 27054 bytes (8398 bytes = 23.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31396 bytes Input file size = 31510 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21918 Output IDAT size = 21918 bytes (9478 bytes decrease) Output file size = 21996 bytes (9514 bytes = 30.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29936 bytes Input file size = 30050 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19689 Output IDAT size = 19689 bytes (10247 bytes decrease) Output file size = 19767 bytes (10283 bytes = 34.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15880 bytes Input file size = 15970 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13482 Output IDAT size = 13482 bytes (2398 bytes decrease) Output file size = 13560 bytes (2410 bytes = 15.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-20-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18415 bytes Input file size = 18517 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15620 Output IDAT size = 15620 bytes (2795 bytes decrease) Output file size = 15698 bytes (2819 bytes = 15.22% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-21-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 39888 bytes Input file size = 40014 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32161 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32161 Output IDAT size = 32161 bytes (7727 bytes decrease) Output file size = 32239 bytes (7775 bytes = 19.43% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-1.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8861 bytes Input file size = 9731 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7983 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7975 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7975 Output IDAT size = 7975 bytes (886 bytes decrease) Output file size = 8053 bytes (1678 bytes = 17.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-2.png 847x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7607 bytes Input file size = 8465 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6771 Output IDAT size = 6771 bytes (836 bytes decrease) Output file size = 6849 bytes (1616 bytes = 19.09% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18083 bytes Input file size = 18185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15200 Output IDAT size = 15200 bytes (2883 bytes decrease) Output file size = 15278 bytes (2907 bytes = 15.99% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-23-4.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17300 bytes Input file size = 17402 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14424 Output IDAT size = 14424 bytes (2876 bytes decrease) Output file size = 14502 bytes (2900 bytes = 16.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-26-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53826 bytes Input file size = 53976 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41311 Output IDAT size = 41311 bytes (12515 bytes decrease) Output file size = 41389 bytes (12587 bytes = 23.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-1.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35364 bytes Input file size = 35490 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27359 Output IDAT size = 27359 bytes (8005 bytes decrease) Output file size = 27437 bytes (8053 bytes = 22.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-2.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33149 bytes Input file size = 33275 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25066 Output IDAT size = 25066 bytes (8083 bytes decrease) Output file size = 25144 bytes (8131 bytes = 24.44% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast04-AOA-tutorial_files/figure-html/unnamed-chunk-27-3.png 847x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17346 bytes Input file size = 17448 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15088 Output IDAT size = 15088 bytes (2258 bytes decrease) Output file size = 15166 bytes (2282 bytes = 13.08% decrease) --- finished re-building ‘cast04-AOA-tutorial.Rmd’ --- re-building ‘cast05-parallel.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17057 bytes Input file size = 17159 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11957 Output IDAT size = 11957 bytes (5100 bytes decrease) Output file size = 12035 bytes (5124 bytes = 29.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20542 bytes Input file size = 20644 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13867 Output IDAT size = 13867 bytes (6675 bytes decrease) Output file size = 13945 bytes (6699 bytes = 32.45% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-5-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17944 bytes Input file size = 18046 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11861 Output IDAT size = 11861 bytes (6083 bytes decrease) Output file size = 11939 bytes (6107 bytes = 33.84% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18793 bytes Input file size = 18895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13180 Output IDAT size = 13180 bytes (5613 bytes decrease) Output file size = 13258 bytes (5637 bytes = 29.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22951 bytes Input file size = 23053 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17072 Output IDAT size = 17072 bytes (5879 bytes decrease) Output file size = 17150 bytes (5903 bytes = 25.61% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-6-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 6340 bytes Input file size = 6418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4892 Output IDAT size = 4892 bytes (1448 bytes decrease) Output file size = 4970 bytes (1448 bytes = 22.56% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 8 bits/pixel, 249 colors in palette Input IDAT size = 2533 bytes Input file size = 3370 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2167 Output IDAT size = 2167 bytes (366 bytes decrease) Output file size = 3004 bytes (366 bytes = 10.86% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-2.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7340 bytes Input file size = 7418 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5548 Output IDAT size = 5548 bytes (1792 bytes decrease) Output file size = 5626 bytes (1792 bytes = 24.16% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/CAST.Rcheck/vign_test/CAST/vignettes/cast05-parallel_files/figure-html/unnamed-chunk-9-3.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 7580 bytes Input file size = 7658 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5683 Output IDAT size = 5683 bytes (1897 bytes decrease) Output file size = 5761 bytes (1897 bytes = 24.77% decrease) --- finished re-building ‘cast05-parallel.Rmd’ SUMMARY: processing the following files failed: ‘cast01-CAST-intro.Rmd’ ‘cast02-plotgeodist.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'cast01-CAST-intro.Rmd' using rmarkdown Quitting from lines 73-78 [unnamed-chunk-5] (cast01-CAST-intro.Rmd) Error: processing vignette 'cast01-CAST-intro.Rmd' failed with diagnostics: unable to find an inherited method for function 'crop' for signature 'x = "NULL"' --- failed re-building 'cast01-CAST-intro.Rmd' --- re-building 'cast02-plotgeodist.Rmd' using rmarkdown Quitting from lines 242-246 [unnamed-chunk-17] (cast02-plotgeodist.Rmd) Error: processing vignette 'cast02-plotgeodist.Rmd' failed with diagnostics: attempt to set an attribute on NULL --- failed re-building 'cast02-plotgeodist.Rmd' --- re-building 'cast03-CV.Rmd' using rmarkdown --- finished re-building 'cast03-CV.Rmd' --- re-building 'cast04-AOA-tutorial.Rmd' using rmarkdown --- finished re-building 'cast04-AOA-tutorial.Rmd' --- re-building 'cast05-parallel.Rmd' using rmarkdown --- finished re-building 'cast05-parallel.Rmd' SUMMARY: processing the following files failed: 'cast01-CAST-intro.Rmd' 'cast02-plotgeodist.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'cast01-CAST-intro.Rmd' using rmarkdown Quitting from lines 73-78 [unnamed-chunk-5] (cast01-CAST-intro.Rmd) Error: processing vignette 'cast01-CAST-intro.Rmd' failed with diagnostics: unable to find an inherited method for function 'crop' for signature '"NULL"' --- failed re-building 'cast01-CAST-intro.Rmd' --- re-building 'cast02-plotgeodist.Rmd' using rmarkdown Quitting from lines 242-246 [unnamed-chunk-17] (cast02-plotgeodist.Rmd) Error: processing vignette 'cast02-plotgeodist.Rmd' failed with diagnostics: attempt to set an attribute on NULL --- failed re-building 'cast02-plotgeodist.Rmd' --- re-building 'cast03-CV.Rmd' using rmarkdown --- finished re-building 'cast03-CV.Rmd' --- re-building 'cast04-AOA-tutorial.Rmd' using rmarkdown --- finished re-building 'cast04-AOA-tutorial.Rmd' --- re-building 'cast05-parallel.Rmd' using rmarkdown --- finished re-building 'cast05-parallel.Rmd' SUMMARY: processing the following files failed: 'cast01-CAST-intro.Rmd' 'cast02-plotgeodist.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64