CRAN Package Check Results for Package DNAmixturesLite

Last updated on 2024-10-09 01:48:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0-1 10.99 1857.55 1868.54 ERROR
r-devel-linux-x86_64-debian-gcc 0.0-1 7.68 1815.38 1823.06 ERROR
r-devel-linux-x86_64-fedora-clang 0.0-1 263.08 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0-1 1698.35 ERROR
r-devel-windows-x86_64 0.0-1 12.00 0.00 12.00 FAIL
r-patched-linux-x86_64 0.0-1 10.90 1854.66 1865.56 ERROR
r-release-linux-x86_64 0.0-1 10.34 1852.88 1863.22 ERROR
r-release-macos-arm64 0.0-1 63.00 NOTE
r-release-macos-x86_64 0.0-1 98.00 NOTE
r-release-windows-x86_64 0.0-1 13.00 0.00 13.00 FAIL
r-oldrel-macos-arm64 0.0-1 80.00 OK
r-oldrel-macos-x86_64 0.0-1 116.00 OK
r-oldrel-windows-x86_64 0.0-1 17.00 0.00 17.00 FAIL

Check Details

Version: 0.0-1
Check: Rd files
Result: NOTE checkRd: (-1) setCPT.O.Rd:85: Lost braces; missing escapes or markup? 85 | statespace {0,1,2}, which this is *not* checked anywhere. Thus, if | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 0.0-1
Check: examples
Result: ERROR Running examples in ‘DNAmixturesLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: map.genotypes > ### Title: Maximum posterior genotypes of unknown contributors > ### Aliases: map.genotypes > > ### ** Examples > > data(MC18, USCaucasian, SGMplusDyes) > mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian) Warning: Some observed peaks are below the given detection threshold and are set to 0 > p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07), + phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1))) > ## Inlude the peak height information > setPeakInfo(mix, p) > ## Marginally best genotypes for contributor U1 > mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539") Killed Examples with CPU (user + system) or elapsed time > 5s user system elapsed DNAmixturesLite-package 6.722 0.067 8.73 boxplot.DNAmixture 5.806 0.043 6.99 Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.0-1
Check: examples
Result: ERROR Running examples in ‘DNAmixturesLite-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: map.genotypes > ### Title: Maximum posterior genotypes of unknown contributors > ### Aliases: map.genotypes > > ### ** Examples > > data(MC18, USCaucasian, SGMplusDyes) > mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian) Warning: Some observed peaks are below the given detection threshold and are set to 0 > p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07), + phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1))) > ## Inlude the peak height information > setPeakInfo(mix, p) > ## Marginally best genotypes for contributor U1 > mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539") Killed Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.0-1
Check: examples
Result: ERROR Running examples in ‘DNAmixturesLite-Ex.R’ failed The error most likely occurred in: > ### Name: map.genotypes > ### Title: Maximum posterior genotypes of unknown contributors > ### Aliases: map.genotypes > > ### ** Examples > > data(MC18, USCaucasian, SGMplusDyes) > mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian) Warning: Some observed peaks are below the given detection threshold and are set to 0 > p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07), + phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1))) > ## Inlude the peak height information > setPeakInfo(mix, p) > ## Marginally best genotypes for contributor U1 > mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539") Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.0-1
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: Warning: Some observed peaks are below the given detection threshold and are set to 0 > p <- mixpar(rho = list(30), eta = list(34), xi = list(0.08), + phi = list(c(K1 = 0.71, K3 = 0.1, K2 = 0.19))) > l <- logL(mixHp) > l(p) [1] -324.0419 > > > > cleanEx() > nameEx("map.genotypes") > ### * map.genotypes > > flush(stderr()); flush(stdout()) > > ### Name: map.genotypes > ### Title: Maximum posterior genotypes of unknown contributors > ### Aliases: map.genotypes > > ### ** Examples > > data(MC18, USCaucasian, SGMplusDyes) > mix <- DNAmixture(list(MC18), k = 3, K = "K1", C = list(50), database = USCaucasian) Warning: Some observed peaks are below the given detection threshold and are set to 0 > p <- mixpar(rho = list(30), eta = list(30), xi = list(0.07), + phi = list(c(K1 = 0.7, U1 =0.2, U2 = 0.1))) > ## Inlude the peak height information > setPeakInfo(mix, p) > ## Marginally best genotypes for contributor U1 > mpU1 <- map.genotypes(mix, pmin = 0.01, U = 1, type = "seen", markers = "D16S539") ======== End of example output (where/before crash/hang up occured ?) ======== Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64