Last updated on 2025-09-17 01:51:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 9.13 | 159.51 | 168.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 7.13 | 104.21 | 111.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 251.76 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 243.69 | OK | |||
| r-devel-windows-x86_64 | 1.3.0 | 11.00 | 140.00 | 151.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.0 | 10.08 | 150.17 | 160.25 | OK | |
| r-release-linux-x86_64 | 1.3.0 | 8.68 | 151.15 | 159.83 | OK | |
| r-release-macos-arm64 | 1.3.0 | 63.00 | OK | |||
| r-release-macos-x86_64 | 1.3.0 | 129.00 | OK | |||
| r-release-windows-x86_64 | 1.3.0 | 10.00 | 142.00 | 152.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.0 | 65.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 143.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.0 | 14.00 | 191.00 | 205.00 | OK |
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in 'JointFPM-Ex.R' failed
The error most likely occurred in:
> ### Name: test_dfs_JointFPM
> ### Title: Tests DFs for JointFPMs.
> ### Aliases: test_dfs_JointFPM
>
> ### ** Examples
>
> # Test different dfs
> test_dfs_JointFPM(Surv(time = start,
+ time2 = stop,
+ event = event,
+ type = 'counting') ~ 1,
+ re_model = ~ pyridoxine + thiotepa,
+ ce_model = ~ pyridoxine + thiotepa,
+ re_indicator = "re",
+ ce_indicator = "ce",
+ dfs_ce = 1:3,
+ dfs_re = 2,
+ tvc_ce_terms = list(thiotepa = 1:2),
+ tvc_re_terms = list(pyridoxine = 2),
+ cluster = "id",
+ data = bladder1_stacked)
Error in UseMethod("logLik") :
no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
Calls: test_dfs_JointFPM ... cbind -> data.frame -> <Anonymous> -> AIC.default -> ll
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [48s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(JointFPM)
>
> test_check("JointFPM")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]
══ Skipped tests (13) ══════════════════════════════════════════════════════════
• On CRAN (13): 'test-mean_no.R:2:3', 'test-mean_no.R:17:3',
'test-JointFPM.R:2:3', 'test-JointFPM.R:22:3', 'test-JointFPM.R:42:3',
'test-JointFPM.R:62:3', 'test-JointFPM.R:83:3',
'test-predict.JointFPM.R:2:3', 'test-predict.JointFPM.R:78:3',
'test-predict.JointFPM.R:103:3', 'test-predict.JointFPM.R:130:3',
'test-predict.JointFPM.R:156:3', 'test-predict.JointFPM.R:496:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-test_dfs_JointFPM.R:2:3'): Stable output of test run ───────────
Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
Backtrace:
▆
1. └─testthat::expect_snapshot(...) at test-test_dfs_JointFPM.R:2:3
2. └─rlang::cnd_signal(state$error)
── Error ('test-test_dfs_JointFPM.R:25:5'): Stable output of test run ──────────
Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "c('stpm2', 'mle2')"
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-test_dfs_JointFPM.R:23:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─JointFPM::test_dfs_JointFPM(...) at test-test_dfs_JointFPM.R:25:5
5. └─base::lapply(...)
6. └─JointFPM (local) FUN(X[[i]], ...)
7. └─JointFPM:::test_df(...)
8. ├─base::cbind(out, list(stats::AIC(model$model), stats::BIC(model$model)))
9. │ └─base::cbind(deparse.level, ...)
10. │ └─base::data.frame(..., check.names = FALSE)
11. ├─stats::AIC(model$model)
12. └─stats:::AIC.default(model$model)
13. └─stats (local) ll(object)
[ FAIL 2 | WARN 0 | SKIP 13 | PASS 24 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64