CRAN Package Check Results for Package NetRep

Last updated on 2020-02-21 19:48:57 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 148.02 152.44 300.46 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 103.91 116.13 220.04 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 419.96 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 382.21 OK
r-devel-windows-ix86+x86_64 1.2.1 272.00 197.00 469.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.2.1 397.00 257.00 654.00 NOTE
r-patched-linux-x86_64 1.2.1 OK
r-patched-solaris-x86 1.2.1 293.10 ERROR
r-release-linux-x86_64 1.2.1 119.12 139.27 258.39 OK
r-release-windows-ix86+x86_64 1.2.1 259.00 196.00 455.00 OK
r-release-osx-x86_64 1.2.1 NOTE
r-oldrel-windows-ix86+x86_64 1.2.1 367.00 200.00 567.00 OK
r-oldrel-osx-x86_64 1.2.1 NOTE

Check Details

Version: 1.2.1
Check: installed package size
Result: NOTE
     installed size is 9.1Mb
     sub-directories of 1Mb or more:
     doc 1.8Mb
     libs 6.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64-gcc8, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: modulePreservation
    > ### Title: Replication and preservation of network modules across datasets
    > ### Aliases: modulePreservation
    >
    > ### ** Examples
    >
    > # load in example data, correlation, and network matrices for a discovery and test dataset:
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > # Assess module preservation: you should run at least 10,000 permutations
    > preservation <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test", nThreads=2
    + )
    [2020-02-18 10:18:59 GMT] Validating user input...
    [2020-02-18 10:18:59 GMT] Checking matrices for problems...
    [2020-02-18 10:18:59 GMT] Input ok!
    [2020-02-18 10:18:59 GMT] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2020-02-18 10:18:59 GMT] Pre-computing network properties in dataset
     "discovery"...
    [2020-02-18 10:19:00 GMT] Calculating observed test statistics...
    [2020-02-18 10:19:00 GMT] Generating null distributions from 1000
     permutations using 2 threads...
    
    
     0% completed.
     30% completed.Error in PermutationProcedure(discProps, dataEnv$matrix, correlationEnv$matrix, :
     BLAS/LAPACK routine 'DORGQRNo transposeCo' gave error code -3
    Calls: modulePreservation ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address 1, cause 'memory not mapped'
Flavor: r-patched-solaris-x86