Last updated on 2026-06-08 02:51:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.19.0 | 5.94 | 207.10 | 213.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.19.0 | 4.33 | 51.45 | 55.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.19.0 | 11.00 | 334.07 | 345.07 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.19.0 | 11.00 | 373.41 | 384.41 | OK | |
| r-devel-windows-x86_64 | 1.19.0 | 8.00 | 301.00 | 309.00 | OK | |
| r-patched-linux-x86_64 | 1.19.0 | 7.86 | 198.39 | 206.25 | OK | |
| r-release-linux-x86_64 | 1.19.0 | 5.84 | 200.07 | 205.91 | OK | |
| r-release-macos-arm64 | 1.19.0 | 2.00 | 108.00 | 110.00 | OK | |
| r-release-macos-x86_64 | 1.19.0 | 5.00 | 281.00 | 286.00 | OK | |
| r-release-windows-x86_64 | 1.19.0 | 9.00 | 300.00 | 309.00 | OK | |
| r-oldrel-macos-arm64 | 1.19.0 | 2.00 | 338.00 | 340.00 | OK | |
| r-oldrel-macos-x86_64 | 1.19.0 | 5.00 | 297.00 | 302.00 | OK | |
| r-oldrel-windows-x86_64 | 1.19.0 | 10.00 | 366.00 | 376.00 | OK |
Version: 1.19.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [2s/3s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> # Test files in inst/tinytest/
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ suppressMessages(tinytest::test_package("OmicNavigator"))
+ }
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 0 tests
testAdd.R..................... 1 tests OK
testAdd.R..................... 1 tests OK
testAdd.R..................... 1 tests OK
testAdd.R..................... 2 tests OK
testAdd.R..................... 3 tests OK
testAdd.R..................... 3 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 4 tests OK
testAdd.R..................... 5 tests OK
testAdd.R..................... 5 tests OK
testAdd.R..................... 5 tests OK
testAdd.R..................... 5 tests OK
testAdd.R..................... 6 tests OK
testAdd.R..................... 6 tests OK
testAdd.R..................... 6 tests OK
testAdd.R..................... 6 tests OK
testAdd.R..................... 6 tests OK
testAdd.R..................... 7 tests OK
testAdd.R..................... 7 tests OK
testAdd.R..................... 7 tests OK
testAdd.R..................... 7 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 8 tests OK
testAdd.R..................... 9 tests OK
testAdd.R..................... 9 tests OK
testAdd.R..................... 10 tests OK
testAdd.R..................... 10 tests OK 1.6s
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests
testApp.R..................... 0 tests Error in install.packages(tmpPkgDir, lib = library, repos = NULL, type = "source", :
(converted from warning) installation of package '/tmp/RtmpsVtfxb/ONstudyABC' had non-zero exit status
Calls: suppressMessages ... withCallingHandlers -> installStudy -> install.packages
In addition: Warning messages:
1: In addMetaAssays(study, metaAssays = metaAssays) :
Support for metaAssays is highly experimental
2: In addObjects(study, objects = objects) :
Support for objects is highly experimental
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.19.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘OmicNavigatorAPI.Rnw’ using Sweave
OmicNavigator R package version: 1.19.0
The app is not installed. Install it with installApp()
Installing study "ABC" in /tmp/Rtmph0th51/file4ef402ea3fa63
Exporting study "ABC" as an R package
Note: No maintainer email was specified. Using the placeholder: Unknown <unknown@unknown>
Calculating pairwise overlaps. This may take a while...
Exported study to /tmp/Rtmph0th51/ONstudyABC
Error: processing vignette 'OmicNavigatorAPI.Rnw' failed with diagnostics:
chunk 3 (label = test-data)
Error in install.packages(tmpPkgDir, lib = library, repos = NULL, type = "source", :
(converted from warning) installation of package ‘/tmp/Rtmph0th51/ONstudyABC’ had non-zero exit status
--- failed re-building ‘OmicNavigatorAPI.Rnw’
--- re-building ‘OmicNavigatorUsersGuide.Rnw’ using Sweave
OmicNavigator R package version: 1.19.0
The app is not installed. Install it with installApp()
Installing study "vignetteExample" in /tmp/RtmpfDDQuT/file4f21799760bb
Exporting study "vignetteExample" as an R package
Note: No maintainer email was specified. Using the placeholder: Unknown <unknown@unknown>
Calculating pairwise overlaps. This may take a while...
Exported study to /tmp/RtmpfDDQuT/ONstudyvignetteExample
Success!
Returning "default" features for modelID "modelThatDoesntExistYet"
--- finished re-building ‘OmicNavigatorUsersGuide.Rnw’
SUMMARY: processing the following file failed:
‘OmicNavigatorAPI.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc