CRAN Package Check Results for Package RRphylo

Last updated on 2022-06-30 01:49:18 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.6.3 25.17 358.15 383.32 OK
r-devel-linux-x86_64-debian-gcc 2.6.3 22.26 253.06 275.32 OK
r-devel-linux-x86_64-fedora-clang 2.6.3 484.72 OK
r-devel-linux-x86_64-fedora-gcc 2.6.3 490.30 OK
r-devel-windows-x86_64 2.6.3 57.00 742.00 799.00 OK
r-patched-linux-x86_64 2.6.3 19.96 332.75 352.71 OK
r-release-linux-x86_64 2.6.3 24.78 332.98 357.76 OK
r-release-macos-arm64 2.6.3 233.00 NOTE
r-release-macos-x86_64 2.6.3 317.00 NOTE
r-release-windows-x86_64 2.6.3 67.00 720.00 787.00 OK
r-oldrel-macos-arm64 2.6.3 242.00 NOTE
r-oldrel-macos-x86_64 2.6.3 306.00 NOTE
r-oldrel-windows-ix86+x86_64 2.6.3 50.00 431.00 481.00 WARN

Check Details

Version: 2.6.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘webshot2’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.6.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'RRphylo.Rmd' using rmarkdown
    Loading required package: ape
    Loading required package: kableExtra
    Loading required package: phytools
    Loading required package: maps
    
    Attaching package: 'phytools'
    
    The following object is masked from 'package:RRphylo':
    
     node.paths
    
    --- finished re-building 'RRphylo.Rmd'
    
    --- re-building 'Tree-Manipulation.Rmd' using rmarkdown
    Loading required package: ape
    Loading required package: phytools
    Loading required package: maps
    
    Attaching package: 'phytools'
    
    The following object is masked from 'package:RRphylo':
    
     node.paths
    
    Loading required package: kableExtra
    --- finished re-building 'Tree-Manipulation.Rmd'
    
    --- re-building 'overfitRR.Rmd' using rmarkdown
    Loading required package: RRphylo
    Loading required package: emmeans
    --- finished re-building 'overfitRR.Rmd'
    
    --- re-building 'search.conv.Rmd' using rmarkdown
    Loading required package: kableExtra
    Loading required package: vegan
    Loading required package: permute
    Loading required package: lattice
    This is vegan 2.6-2
    
    Attaching package: 'vegan'
    
    The following object is masked from 'package:phytools':
    
     scores
    
    Loading required package: cluster
    
    Attaching package: 'cluster'
    
    The following object is masked from 'package:maps':
    
     votes.repub
    
    Loading required package: plotrix
    
    Attaching package: 'plotrix'
    
    The following object is masked from 'package:rgl':
    
     mtext3d
    
    Loading required package: geomorph
    Loading required package: RRPP
    Loading required package: Matrix
    Loading required package: pdftools
    Using poppler version 22.04.0
    --- finished re-building 'search.conv.Rmd'
    
    --- re-building 'search.shift.Rmd' using rmarkdown
    Loading required package: ape
    Loading required package: phytools
    Loading required package: maps
    
    Attaching package: 'phytools'
    
    The following object is masked from 'package:RRphylo':
    
     node.paths
    
    Loading required package: scales
    Loading required package: kableExtra
    Loading required package: plotrix
    
    Attaching package: 'plotrix'
    
    The following object is masked from 'package:scales':
    
     rescale
    
    Loading required package: RColorBrewer
    --- finished re-building 'search.shift.Rmd'
    
    --- re-building 'search.trend.Rmd' using rmarkdown
    Loading required package: ape
    Loading required package: phytools
    Loading required package: maps
    
    Attaching package: 'phytools'
    
    The following object is masked from 'package:RRphylo':
    
     node.paths
    
    Loading required package: ddpcr
    
    Attaching package: 'ddpcr'
    
    The following object is masked from 'package:stats':
    
     step
    
    Quitting from lines 43-166 (search.trend.Rmd)
    Error: processing vignette 'search.trend.Rmd' failed with diagnostics:
    worker initialization failed: there is no package called 'geiger'
    --- failed re-building 'search.trend.Rmd'
    
    --- re-building 'swapONE.Rmd' using rmarkdown
    Loading required package: ape
    Loading required package: phytools
    Loading required package: maps
    
    Attaching package: 'phytools'
    
    The following object is masked from 'package:RRphylo':
    
     node.paths
    
    --- finished re-building 'swapONE.Rmd'
    
    SUMMARY: processing the following file failed:
     'search.trend.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64