Last updated on 2024-08-16 01:48:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.2 | 12.70 | 115.64 | 128.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.2 | 7.62 | 79.50 | 87.12 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.2 | 206.33 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.2 | 206.01 | OK | |||
| r-devel-windows-x86_64 | 2.0.2 | 15.00 | 130.00 | 145.00 | OK | |
| r-patched-linux-x86_64 | 2.0.2 | 13.04 | 108.55 | 121.59 | OK | |
| r-release-linux-x86_64 | 2.0.2 | 10.75 | 107.83 | 118.58 | ERROR | |
| r-release-macos-arm64 | 2.0.2 | 69.00 | OK | |||
| r-release-macos-x86_64 | 2.0.2 | 110.00 | OK | |||
| r-release-windows-x86_64 | 2.0.2 | 14.00 | 138.00 | 152.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.2 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.2 | 161.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.2 | 19.00 | 156.00 | 175.00 | OK |
Version: 2.0.2
Check: examples
Result: ERROR
Running examples in ‘galah-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: print_galah_objects
> ### Title: Print galah objects
> ### Aliases: print_galah_objects print.data_request print.files_request
> ### print.metadata_request print.query print.computed_query
> ### print.query_set print.galah_config
>
> ### ** Examples
>
> # The most common way to start a pipe is with `galah_call()`
> # later functions update the `data_request` object
> galah_call() |> # same as calling `request_data()`
+ filter(year >= 2020) |>
+ group_by(year) |>
+ count()
Object of type `data_request` containing:
• type occurrences-count
• filter year >= 2020
• group_by year>
> # Metadata requests are formatted in a similar way
> request_metadata() |>
+ filter(field == basisOfRecord) |>
+ unnest()
Object of type `metadata_request` containing:
• type fields-unnest
• filter field == basisOfRecord>
> # Queries are converted into a `query_set` by `collapse()`
> x <- galah_call() |> # same as calling `request_data()`
+ filter(year >= 2020) |>
+ count() |>
+ collapse()
Error in `req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached: [biocache-ws.ala.org.au] Connection timed out after 20000 milliseconds
Backtrace:
▆
1. ├─dplyr::collapse(count(filter(galah_call(), year >= 2020)))
2. └─galah:::collapse.data_request(...)
3. ├─galah:::parse_query(parse_checks(build_checks(query_set)))
4. ├─galah:::parse_checks(build_checks(query_set))
5. │ └─base::grepl("^data/", .query$type)
6. │ └─base::is.factor(x)
7. └─galah:::build_checks(query_set)
8. └─galah:::parse_metadata(names_vec, .query)
9. └─base::lapply(.query[which(metadata_lookup)], collect)
10. ├─dplyr (local) FUN(X[[i]], ...)
11. └─galah:::collect.query(X[[i]], ...)
12. ├─dplyr::collect(compute(x), wait = wait, file = file)
13. └─galah:::collect.computed_query(compute(x), wait = wait, file = file)
14. └─galah:::collect_fields(x)
15. ├─dplyr::bind_rows(query_API(.query))
16. │ └─rlang::list2(...)
17. └─galah:::query_API(.query)
18. └─galah:::query_API_internal(.query)
19. └─httr2::req_perform(req_timeout(query, seconds = 20), verbosity = 0)
20. └─base::tryCatch(...)
21. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
22. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
23. └─value[[3L]](cond)
Execution halted
Flavor: r-release-linux-x86_64