CRAN Package Check Results for Package genBaRcode

Last updated on 2020-02-26 07:51:41 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 7.88 206.99 214.87 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.2 7.25 160.87 168.12 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 260.93 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.2 242.02 OK
r-devel-windows-ix86+x86_64 1.2.2 23.00 203.00 226.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.2.2 25.00 208.00 233.00 OK
r-patched-linux-x86_64 1.2.2 6.68 179.43 186.11 OK
r-patched-solaris-x86 1.2.2 343.50 OK
r-release-linux-x86_64 1.2.2 6.19 183.40 189.59 OK
r-release-windows-ix86+x86_64 1.2.2 15.00 189.00 204.00 OK
r-release-osx-x86_64 1.2.2 ERROR
r-oldrel-windows-ix86+x86_64 1.2.2 10.00 209.00 219.00 OK
r-oldrel-osx-x86_64 1.2.2 ERROR

Check Details

Version: 1.2.2
Check: tests
Result: ERROR
     Running 'testthat.R' [18s/18s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(genBaRcode)
     >
     > test_check("genBaRcode")
     -- 1. Failure: helper functions - com_pair (@test_helper_functions.R#72) ------
     test_dat$shared not equal to res$shared.
     Component "barcode": Modes: character, numeric
     Component "barcode": Attributes: < target is NULL, current is list >
     Component "barcode": target is character, current is factor
     Component "barcode": Modes: character, numeric
     Component "barcode": Attributes: < target is NULL, current is list >
     Component "barcode": target is character, current is factor
    
     -- 2. Failure: helper functions - com_pair (@test_helper_functions.R#73) ------
     test_dat$unique_sample1 not equal to res$unique_sample1.
     Component "barcode": Modes: character, numeric
     Component "barcode": Attributes: < target is NULL, current is list >
     Component "barcode": target is character, current is factor
    
     -- 3. Failure: helper functions - com_pair (@test_helper_functions.R#74) ------
     test_dat$unique_sample2 not equal to res$unique_sample2.
     Component "barcode": Modes: character, numeric
     Component "barcode": Attributes: < target is NULL, current is list >
     Component "barcode": target is character, current is factor
    
     == testthat results ===========================================================
     [ OK: 47 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 3 ]
     1. Failure: helper functions - com_pair (@test_helper_functions.R#72)
     2. Failure: helper functions - com_pair (@test_helper_functions.R#73)
     3. Failure: helper functions - com_pair (@test_helper_functions.R#74)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.2
Check: package dependencies
Result: NOTE
    Imports includes 22 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [6s/6s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("genBaRcode")
     ── 1. Error: (unknown) (@test_raw_data_functions.R#3) ─────────────────────────
     package 'GenomeInfoDb' could not be loaded
     Backtrace:
     1. base::library(ShortRead)
     2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
     3. base::library(...)
     4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 17 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 1 ]
     1. Error: (unknown) (@test_raw_data_functions.R#3)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
    
    --- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
    Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
    there is no package called 'GenomeInfoDbData'
    --- failed re-building ‘genBaRcode_Vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘genBaRcode_Vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ShortRead’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64