CRAN Package Check Results for Package gimap

Last updated on 2025-03-06 01:51:09 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.2	7.56	82.06	89.62	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.2	5.54	56.73	62.27	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.2			141.75	OK
r-devel-linux-x86_64-fedora-gcc	1.0.2			162.71	OK
r-devel-macos-arm64	1.0.2			62.00	OK
r-devel-macos-x86_64	1.0.2			150.00	OK
r-devel-windows-x86_64	1.0.2	9.00	106.00	115.00	OK
r-patched-linux-x86_64	1.0.2				ERROR
r-release-linux-x86_64	1.0.2	6.75	74.09	80.84	ERROR
r-release-macos-arm64	1.0.2			62.00	OK
r-release-macos-x86_64	1.0.2			107.00	OK
r-release-windows-x86_64	1.0.2	9.00	98.00	107.00	OK
r-oldrel-macos-arm64	1.0.2			80.00	OK
r-oldrel-macos-x86_64	1.0.2			123.00	OK
r-oldrel-windows-x86_64	1.0.2	12.00	106.00	118.00	OK

Additional issues

rlibro

Check Details

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |== | 3% | |==== | 6% | |======= | 10% | |========== | 14% | |============ | 18% | |=============== | 21% | |================== | 25% | |==================== | 28% | |======================= | 33% | |========================= | 36% | |============================ | 40% | |============================== | 43% | |================================ | 45% | |================================= | 47% | |=================================== | 50% | |==================================== | 51% | |====================================== | 55% | |========================================= | 58% | |=========================================== | 61% | |============================================== | 65% | |================================================ | 68% | |=================================================== | 72% | |===================================================== | 76% | |======================================================== | 80% | |========================================================== | 83% | |============================================================= | 87% | |================================================================ | 91% | |================================================================== | 95% | |===================================================================== | 98% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed run_qc 6.116 0.181 8.757 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |== | 3% | |==== | 6% | |======= | 10% | |========== | 14% | |========== | 15% | |=========== | 16% | |============ | 17% | |============ | 18% | |============= | 18% | |============== | 20% | |=============== | 21% | |=============== | 22% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 28% | |==================== | 28% | |==================== | 29% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |============================ | 39% | |============================== | 43% | |================================= | 47% | |=================================== | 50% | |==================================== | 51% | |==================================== | 52% | |===================================== | 53% | |===================================== | 54% | |====================================== | 54% | |======================================= | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 59% | |========================================== | 60% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |================================================ | 69% | |=================================================== | 73% | |====================================================== | 77% | |======================================================== | 80% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 86% | |============================================================= | 87% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 93% | |================================================================== | 94% | |=================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 97% | |===================================================================== | 98% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |== | 2% | |=== | 4% | |==== | 6% | |====== | 9% | |======== | 11% | |========= | 13% | |============ | 17% | |=============== | 21% | |================= | 25% | |==================== | 28% | |======================= | 32% | |========================= | 36% | |============================ | 40% | |============================== | 43% | |================================= | 47% | |================================= | 48% | |================================== | 48% | |================================== | 49% | |=================================== | 51% | |==================================== | 52% | |===================================== | 53% | |======================================== | 57% | |========================================= | 58% | |=========================================== | 62% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 67% | |================================================ | 69% | |================================================= | 69% | |================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 76% | |====================================================== | 78% | |======================================================= | 79% | |======================================================== | 80% | |========================================================= | 82% | |========================================================== | 83% | |=========================================================== | 84% | |============================================================ | 86% | |============================================================= | 87% | |============================================================== | 88% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================ | 92% | |================================================================= | 93% | |================================================================== | 95% | |=================================================================== | 96% | |==================================================================== | 97% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |== | 2% | |=== | 4% | |===== | 6% | |======= | 11% | |========== | 14% | |========== | 15% | |=========== | 15% | |============ | 17% | |============== | 19% | |=============== | 21% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 27% | |==================== | 29% | |====================== | 31% | |======================== | 35% | |=========================== | 38% | |============================== | 42% | |================================ | 46% | |=================================== | 50% | |===================================== | 53% | |======================================== | 57% | |========================================== | 61% | |============================================ | 63% | |============================================= | 64% | |============================================== | 66% | |================================================ | 68% | |================================================= | 69% | |================================================== | 71% | |=================================================== | 72% | |==================================================== | 74% | |===================================================== | 76% | |====================================================== | 77% | |======================================================= | 79% | |======================================================== | 80% | |========================================================= | 82% | |========================================================== | 83% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 87% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |===================================================================== | 98% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-release-linux-x86_64