CRAN Package Check Results for Package glmmTMB

Last updated on 2020-01-29 15:48:23 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.3 158.17 322.07 480.24 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.3 148.29 255.24 403.53 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.3 655.61 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.3 687.99 ERROR
r-devel-windows-ix86+x86_64 0.2.3 231.00 510.00 741.00 ERROR --no-vignettes
r-devel-windows-ix86+x86_64-gcc8 0.2.3 322.00 579.00 901.00 ERROR --no-vignettes
r-patched-linux-x86_64 0.2.3 ERROR
r-patched-solaris-x86 0.2.3 804.10 OK
r-release-linux-x86_64 0.2.3 149.40 311.41 460.81 ERROR
r-release-windows-ix86+x86_64 0.2.3 232.00 644.00 876.00 ERROR --no-vignettes
r-release-osx-x86_64 0.2.3 NOTE
r-oldrel-windows-ix86+x86_64 0.2.3 288.00 526.00 814.00 ERROR --no-vignettes
r-oldrel-osx-x86_64 0.2.3 NOTE

Check Details

Version: 0.2.3
Check: tests
Result: ERROR
     Running 'AAAtest-all.R' [141s/152s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-28 r77731)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Debian GNU/Linux bullseye/sid
    
     Matrix products: default
     BLAS: /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libRblas.so
     LAPACK: /home/hornik/tmp/R.check/r-devel-clang/Work/build/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C
     [3] LC_TIME=en_US.iso885915 LC_COLLATE=C
     [5] LC_MONETARY=en_US.iso885915 LC_MESSAGES=en_US.iso885915
     [7] LC_PAPER=en_US.iso885915 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: ..
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     == Warnings ====================================================================
     1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     == Failed ======================================================================
     -- 1. Failure: (unknown) (@test-VarCorr.R#167) --------------------------------
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [115s/158s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-28 r77731)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Debian GNU/Linux bullseye/sid
    
     Matrix products: default
     BLAS: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libRblas.so
     LAPACK: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
     [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
     [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
     [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: .WW.
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     ══ Warnings ════════════════════════════════════════════════════════════════════
     1. (unknown) (@test-disp.R#39) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     2. (unknown) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     3. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     4. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     5. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     6. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     7. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Failure: (unknown) (@test-VarCorr.R#167) ────────────────────────────────
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.3
Check: installed package size
Result: NOTE
     installed size is 45.3Mb
     sub-directories of 1Mb or more:
     doc 1.1Mb
     libs 43.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [168s/273s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-28 r77731)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Fedora 30 (Workstation Edition)
    
     Matrix products: default
     BLAS: /data/gannet/ripley/R/R-clang/lib/libRblas.so
     LAPACK: /data/gannet/ripley/R/R-clang/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_GB.utf8 LC_NUMERIC=C
     [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=C
     [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
     [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: ..
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     ══ Warnings ════════════════════════════════════════════════════════════════════
     1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Failure: (unknown) (@test-VarCorr.R#167) ────────────────────────────────
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [176s/200s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-28 r77731)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Fedora 30 (Workstation Edition)
    
     Matrix products: default
     BLAS: /data/gannet/ripley/R/R-devel/lib/libRblas.so
     LAPACK: /data/gannet/ripley/R/R-devel/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_GB.utf8 LC_NUMERIC=C
     [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=C
     [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
     [7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: ..
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     ══ Warnings ════════════════════════════════════════════════════════════════════
     1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Failure: (unknown) (@test-VarCorr.R#167) ────────────────────────────────
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.3
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 23.5Mb
     sub-directories of 1Mb or more:
     doc 1.0Mb
     libs 21.2Mb
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.3
Flags: --no-vignettes
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [164s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-24 r77710)
     Platform: x86_64-w64-mingw32/x64 (64-bit)
     Running under: Windows Server 2008 x64 (build 6003) Service Pack 2
    
     Matrix products: default
    
     locale:
     [1] LC_COLLATE=C LC_CTYPE=German_Germany.1252
     [3] LC_MONETARY=C LC_NUMERIC=C
     [5] LC_TIME=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: .WW.
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     == Warnings ====================================================================
     1. (unknown) (@test-disp.R#39) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     2. (unknown) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     3. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     4. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     5. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     6. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     7. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     == Failed ======================================================================
     -- 1. Failure: (unknown) (@test-VarCorr.R#167) --------------------------------
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.3
Flags: --no-vignettes
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [184s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R Under development (unstable) (2020-01-07 r77633)
     Platform: x86_64-w64-mingw32/x64 (64-bit)
     Running under: Windows Server 2008 x64 (build 6003) Service Pack 2
    
     Matrix products: default
    
     locale:
     [1] LC_COLLATE=C LC_CTYPE=German_Germany.1252
     [3] LC_MONETARY=C LC_NUMERIC=C
     [5] LC_TIME=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_4.0.0
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.2
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_4.0.0 lme4_1.1-21 TMB_1.7.16 compiler_4.0.0
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: .WW.
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     == Warnings ====================================================================
     1. (unknown) (@test-disp.R#39) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     2. (unknown) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     3. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     4. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     5. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     6. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     7. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     == Failed ======================================================================
     -- 1. Failure: (unknown) (@test-VarCorr.R#167) --------------------------------
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [141s/150s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R version 3.6.2 Patched (2020-01-25 r77715)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Debian GNU/Linux bullseye/sid
    
     Matrix products: default
     BLAS: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libRblas.so
     LAPACK: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
     [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
     [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
     [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_3.6.2
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_3.6.2 lme4_1.1-21 TMB_1.7.16 compiler_3.6.2
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: ..
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     ══ Warnings ════════════════════════════════════════════════════════════════════
     1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Failure: (unknown) (@test-VarCorr.R#167) ────────────────────────────────
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘AAAtest-all.R’ [142s/150s]
    Running the tests in ‘tests/AAAtest-all.R’ failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R version 3.6.2 (2019-12-12)
     Platform: x86_64-pc-linux-gnu (64-bit)
     Running under: Debian GNU/Linux bullseye/sid
    
     Matrix products: default
     BLAS: /home/hornik/tmp/R.check/r-release-gcc/Work/build/lib/libRblas.so
     LAPACK: /home/hornik/tmp/R.check/r-release-gcc/Work/build/lib/libRlapack.so
    
     locale:
     [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
     [3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
     [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
     [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
     [9] LC_ADDRESS=C LC_TELEPHONE=C
     [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_3.6.2
     [5] R6_2.4.1 nlme_3.1-143 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_3.6.2 lme4_1.1-21 TMB_1.7.16 compiler_3.6.2
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: ..
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     ══ Warnings ════════════════════════════════════════════════════════════════════
     1. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     2. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     3. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     4. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     5. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     ══ Failed ══════════════════════════════════════════════════════════════════════
     ── 1. Failure: (unknown) (@test-VarCorr.R#167) ────────────────────────────────
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     ══ DONE ════════════════════════════════════════════════════════════════════════
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.3
Flags: --no-vignettes
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [188s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R version 3.6.2 (2019-12-12)
     Platform: x86_64-w64-mingw32/x64 (64-bit)
     Running under: Windows Server 2008 x64 (build 6003) Service Pack 2
    
     Matrix products: default
    
     locale:
     [1] LC_COLLATE=C LC_CTYPE=German_Germany.1252
     [3] LC_MONETARY=C LC_NUMERIC=C
     [5] LC_TIME=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_3.6.2
     [5] R6_2.4.1 nlme_3.1-142 magrittr_1.5 rlang_0.4.2
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_3.6.2 lme4_1.1-21 TMB_1.7.16 compiler_3.6.2
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: .WW.
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     == Warnings ====================================================================
     1. (unknown) (@test-disp.R#39) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     2. (unknown) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     3. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     4. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     5. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     6. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     7. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     == Failed ======================================================================
     -- 1. Failure: (unknown) (@test-VarCorr.R#167) --------------------------------
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.3
Flags: --no-vignettes
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'AAAtest-all.R' [175s]
    Running the tests in 'tests/AAAtest-all.R' failed.
    Complete output:
     > if(require("testthat")) {
     + pkg <- "glmmTMB"
     + require(pkg, character.only=TRUE)
     + print(sessionInfo())
     + test_check(pkg, reporter="summary")
     + print(warnings()) # TODO? catch most of these by expect_warning(..)
     + } else {
     + warnings("Package 'testthat' not available, cannot run unit tests for package",
     + sQuote(pkg))
     + }
     Loading required package: testthat
     Loading required package: glmmTMB
     R version 3.5.3 (2019-03-11)
     Platform: x86_64-w64-mingw32/x64 (64-bit)
     Running under: Windows Server 2008 x64 (build 6003) Service Pack 2
    
     Matrix products: default
    
     locale:
     [1] LC_COLLATE=C LC_CTYPE=German_Germany.1252
     [3] LC_MONETARY=C LC_NUMERIC=C
     [5] LC_TIME=C
    
     attached base packages:
     [1] stats graphics grDevices utils datasets methods base
    
     other attached packages:
     [1] glmmTMB_0.2.3 testthat_2.3.1
    
     loaded via a namespace (and not attached):
     [1] Rcpp_1.0.3 lattice_0.20-38 MASS_7.3-51.5 grid_3.5.3
     [5] R6_2.4.1 nlme_3.1-137 magrittr_1.5 rlang_0.4.3
     [9] minqa_1.2.4 nloptr_1.2.1 Matrix_1.2-18 boot_1.3-24
     [13] splines_3.5.3 lme4_1.1-21 TMB_1.7.16 compiler_3.5.3
     VarCorr: .........1
     Very basic glmmTMB fitting: .................................
     trickier examples: ..............
     glmmTMBControl: ..
     Testing dispersion: .WW.
     emmeans: ...
     car::Anova: ..
     effects: .W.
     test edge cases: .
     basic examples: ...
     alternative binomial specifications: ..........
     fitting exotic families: ..............................
     trunc compois: ...
     compois: ...
     genpois: ..
     tweedie: .....
     link function info available: ............
     link info added to family: ...
     formula parsing: ................
     basic methods: ........................WW.................................
     simulate consistency with glm/lm: ...
     Ranef etc.: .......
     refit: ...
     offsets: ..........
     Predicting new levels: .
     Catch invalid predictions: ...
     Predict two-column response case: .
     Prediction with dispformula=~0: .
     Handling NA values in predictions: ....W.W..
     prediction with different binomial specs: ..
     zero-inflation prediction: .....
     deprecated zitype parameter: .
     complex bases: ........
     REML: ......
     Saving and loading glmmTMB objects: .
     ..variance structures: ..............
     weight: ....
     ZI models: ..
    
     == Warnings ====================================================================
     1. (unknown) (@test-disp.R#39) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     2. (unknown) - Model convergence problem; false convergence (8). See vignette('troubleshooting')
    
     3. (unknown) (@test-downstream.R#49) - overriding variance function for effects: computed variances may be incorrect
    
     4. terms (@test-methods.R#137) - Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
    
     5. terms (@test-methods.R#137) - Model convergence problem; function evaluation limit reached without convergence (9). See vignette('troubleshooting')
    
     6. (unknown) (@test-predict.R#75) - `failure_message` is missing, with no default.
    
     7. (unknown) (@test-predict.R#77) - `failure_message` is missing, with no default.
    
     == Failed ======================================================================
     -- 1. Failure: (unknown) (@test-VarCorr.R#167) --------------------------------
     `c3` not equal to structure(...).
     Component "V3": Mean relative difference: 1.444528e-05
    
     == DONE ========================================================================
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64