Last updated on 2024-08-16 01:48:24 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.32.4 | 8.51 | 196.38 | 204.89 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.32.4 | 5.62 | 128.50 | 134.12 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.32.4 | 340.39 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.32.4 | 340.02 | OK | |||
| r-devel-windows-x86_64 | 1.32.4 | 10.00 | 579.00 | 589.00 | NOTE | |
| r-patched-linux-x86_64 | 1.32.4 | 12.36 | 190.63 | 202.99 | OK | |
| r-release-linux-x86_64 | 1.32.4 | 8.82 | 133.41 | 142.23 | ERROR | |
| r-release-macos-arm64 | 1.32.4 | 137.00 | OK | |||
| r-release-macos-x86_64 | 1.32.4 | 211.00 | OK | |||
| r-release-windows-x86_64 | 1.32.4 | 9.00 | 625.00 | 634.00 | OK | |
| r-oldrel-macos-arm64 | 1.32.4 | 134.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.32.4 | 370.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.32.4 | 11.00 | 638.00 | 649.00 | OK |
Version: 1.32.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
copyNIfTIHeader.Rd: dropImageDimension, nifti
datatype.Rd: convert.datatype, convert.bitpix
double_ortho.Rd: orthographic
ensure_array.Rd: nifti
fast_readnii.Rd: readNifti, drop_img_dim
img_list_to_ts.Rd: nifti
img_ts_to_df.Rd: nifti
img_ts_to_list.Rd: nifti
img_ts_to_matrix.Rd: nifti
ortho2.Rd: orthographic
random_nifti.Rd: nifti
readNIfTI2.Rd: readNIfTI, drop_img_dim
remake_img.Rd: nifti
replace_dropped_dimensions.Rd: nifti
rescale_img.Rd: drop_img_dim
tempimg.Rd: drop_img_dim
writeNIfTI2.Rd: writeNIfTI, drop_img_dim
write_nifti.Rd: writeNifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.32.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘neurobase.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2_noorient-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho_nona-1.png
288x288 pixels, 8 bits/pixel, 11 colors in palette
Reducing image to 4 bits/pixel, 11 colors in palette
Input IDAT size = 991 bytes
Input file size = 1114 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 598
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 598
Output IDAT size = 598 bytes (393 bytes decrease)
Output file size = 721 bytes (393 bytes = 35.28% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2_nona-1.png
288x288 pixels, 8 bits/pixel, 183 colors in palette
Input IDAT size = 17582 bytes
Input file size = 18245 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17384
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15613
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14676
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14449
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14449
Output IDAT size = 14449 bytes (3133 bytes decrease)
Output file size = 15088 bytes (3157 bytes = 17.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2_large-1.png
288x288 pixels, 8 bits/pixel, 50 colors in palette
Input IDAT size = 7886 bytes
Input file size = 8126 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7642
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 6659
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 6542
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6418
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6418
Output IDAT size = 6418 bytes (1468 bytes decrease)
Output file size = 6658 bytes (1468 bytes = 18.07% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2_rob-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/ortho2_zlim-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/double_ortho-1.png
288x288 pixels, 8 bits/pixel, 211 colors in palette
Input IDAT size = 17201 bytes
Input file size = 17948 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16775
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15841
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 15299
Output IDAT size = 15299 bytes (1902 bytes decrease)
Output file size = 16022 bytes (1926 bytes = 10.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/all_slices-1.png
288x288 pixels, 8 bits/pixel, 78 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 31775 bytes
Input file size = 32135 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31563
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31563
Output IDAT size = 31563 bytes (212 bytes decrease)
Output file size = 31641 bytes (494 bytes = 1.54% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/one_slice-1.png
288x288 pixels, 8 bits/pixel, 53 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7632 bytes
Input file size = 7881 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7505
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 5990
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5855
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5855
Output IDAT size = 5855 bytes (1777 bytes decrease)
Output file size = 5933 bytes (1948 bytes = 24.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/two_slice-1.png
288x288 pixels, 8 bits/pixel, 53 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10456 bytes
Input file size = 10717 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10428
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8776
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 8343
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 8201
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 8201
Output IDAT size = 8201 bytes (2255 bytes decrease)
Output file size = 8279 bytes (2438 bytes = 22.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/one_slice_sag-1.png
288x288 pixels, 8 bits/pixel, 52 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7188 bytes
Input file size = 7434 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7083
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 5377
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5322
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5322
Output IDAT size = 5322 bytes (1866 bytes decrease)
Output file size = 5400 bytes (2034 bytes = 27.36% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/one_slice_overlay-1.png
288x288 pixels, 8 bits/pixel, 3 colors in palette
Reducing image to 2 bits/pixel, 3 colors in palette
Input IDAT size = 911 bytes
Input file size = 1010 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 371
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 371
Output IDAT size = 371 bytes (540 bytes decrease)
Output file size = 470 bytes (540 bytes = 53.47% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/one_slice_overlay_right-1.png
288x288 pixels, 8 bits/pixel, 50 colors in palette
Input IDAT size = 7566 bytes
Input file size = 7806 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7390
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 5620
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5560
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 5560
Output IDAT size = 5560 bytes (2006 bytes decrease)
Output file size = 5800 bytes (2006 bytes = 25.70% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/plot_red-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/plot_full_eve-1.png
288x288 pixels, 8 bits/pixel, 186 colors in palette
Input IDAT size = 17649 bytes
Input file size = 18321 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17458
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15586
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14655
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14426
Output IDAT size = 14426 bytes (3223 bytes decrease)
Output file size = 15074 bytes (3247 bytes = 17.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/plot_mask-1.png
288x288 pixels, 8 bits/pixel, 117 colors in palette
Input IDAT size = 12732 bytes
Input file size = 13185 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12418
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 11532
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10917
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 10531
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 10531
Output IDAT size = 10531 bytes (2201 bytes decrease)
Output file size = 10972 bytes (2213 bytes = 16.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/dens-1.png
288x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6554 bytes
Input file size = 7412 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5868
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5856
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5856
Output IDAT size = 5856 bytes (698 bytes decrease)
Output file size = 5934 bytes (1478 bytes = 19.94% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/dens_2-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6618 bytes
Input file size = 7473 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5953
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5953
Output IDAT size = 5953 bytes (665 bytes decrease)
Output file size = 6031 bytes (1442 bytes = 19.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/neurobase_files/figure-html/dens_with_mask-1.png
288x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6418 bytes
Input file size = 7273 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5747
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5747
Output IDAT size = 5747 bytes (671 bytes decrease)
Output file size = 5825 bytes (1448 bytes = 19.91% decrease)
--- finished re-building ‘neurobase.Rmd’
--- re-building ‘nifti_basics.Rmd’ using rmarkdown
Quitting from lines 189-219 [read_eve] (nifti_basics.Rmd)
Error: processing vignette 'nifti_basics.Rmd' failed with diagnostics:
Internal Server Error (HTTP 500).
--- failed re-building ‘nifti_basics.Rmd’
--- re-building ‘simple_io.Rmd’ using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
Content type 'application/gzip' length 21807043 bytes (20.8 MB)
==================================================
downloaded 20.8 MB
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/ortho2-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27324 bytes
Input file size = 27438 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24074
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24074
Output IDAT size = 24074 bytes (3250 bytes decrease)
Output file size = 24152 bytes (3286 bytes = 11.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/ortho2_noorient-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27324 bytes
Input file size = 27438 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25091
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24074
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24074
Output IDAT size = 24074 bytes (3250 bytes decrease)
Output file size = 24152 bytes (3286 bytes = 11.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/all_slices-1.png
288x288 pixels, 8 bits/pixel, 61 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17430 bytes
Input file size = 17727 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17201
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15266
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 14589
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14230
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 14230
Output IDAT size = 14230 bytes (3200 bytes decrease)
Output file size = 14308 bytes (3419 bytes = 19.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/two_slice-1.png
288x288 pixels, 8 bits/pixel, 59 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11523 bytes
Input file size = 11802 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11306
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11026
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 10749
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 10686
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 10686
Output IDAT size = 10686 bytes (837 bytes decrease)
Output file size = 10764 bytes (1038 bytes = 8.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/one_slice_sag-1.png
288x288 pixels, 8 bits/pixel, 57 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9344 bytes
Input file size = 9617 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9221
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7399
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 7031
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6724
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 6724
Output IDAT size = 6724 bytes (2620 bytes decrease)
Output file size = 6802 bytes (2815 bytes = 29.27% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/neurobase.Rcheck/vign_test/neurobase/vignettes/simple_io_files/figure-html/one_slice_overlay-1.png
288x288 pixels, 8 bits/pixel, 18 colors in palette
Input IDAT size = 14222 bytes
Input file size = 14378 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13873
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 13668
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 12404
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 11840
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 11339
Selecting parameters:
zc = 9 zm = 8 zs = 3 f = 5 IDAT size = 11339
Output IDAT size = 11339 bytes (2883 bytes decrease)
Output file size = 11483 bytes (2895 bytes = 20.13% decrease)
--- finished re-building ‘simple_io.Rmd’
SUMMARY: processing the following file failed:
‘nifti_basics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64