Last updated on 2025-03-06 01:51:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.7 | 14.88 | 315.91 | 330.79 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 10.86 | 197.38 | 208.24 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 589.05 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 553.83 | OK | |||
| r-devel-macos-arm64 | 2.0.0 | 8.00 | ERROR | |||
| r-devel-macos-x86_64 | 2.0.0 | 251.00 | OK | |||
| r-devel-windows-x86_64 | 1.3.7 | 17.00 | 284.00 | 301.00 | ERROR | |
| r-patched-linux-x86_64 | 2.0.0 | OK | ||||
| r-release-linux-x86_64 | 1.3.7 | 16.01 | 298.28 | 314.29 | OK | |
| r-release-macos-arm64 | 2.0.0 | 116.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 257.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 19.00 | 269.00 | 288.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 116.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 238.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.7 | 21.00 | 366.00 | 387.00 | OK |
Version: 1.3.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [82s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(sars)
>
> test_check("sars")
Now attempting to fit the 20 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ powerR : ✔
→ epm1 : ✔
→ epm2 : ✔
→ p1 : ✔
→ p2 : ✔
→ loga : ✔
→ koba : ✔
→ monod : ✔
→ negexpo : ✔
→ chapman : ✔
→ weibull3 : ✔
→ asymp : ✔
→ ratio : ✔
→ gompertz : ✔
→ weibull4 : ✔
→ betap : ✔
→ logistic : ✔
→ heleg : ✔
→ linear : ✔
Model fitting completed - all models succesfully fitted. Now undertaking model validation checks. Additional models will be excluded if necessary:
16 remaining models used to construct the multi SAR:
Power, PowerR, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Rational function, Gompertz, Beta-P cumulative, Logistic(Standard), Heleg(Logistic)
────────────────────────────────────────────────────────────────────────────────
Now attempting to fit the 20 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ powerR : ✔
→ epm1 : ✔
→ epm2 : ✔
→ p1 : ✔
→ p2 : ✔
→ loga : ✔
→ koba : ✔
→ monod : ✔
→ negexpo : ✔
→ chapman : Warning: could not compute parameters statistics
→ weibull3 : ✔
→ asymp : ✔
→ ratio : Warning: could not compute parameters statistics
→ gompertz : ✔
→ weibull4 : Warning: could not compute parameters statistics
→ betap : Warning: could not compute parameters statistics
→ logistic : ✔
→ heleg : ✔
→ linear : ✔
No model validation checks selected
20 remaining models used to construct the multi SAR:
Power, PowerR, Extended Power model 1, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Asymptotic regression, Rational function, Gompertz, Cumulative Weibull 4 par., Beta-P cumulative, Logistic(Standard), Heleg(Logistic), Linear model
────────────────────────────────────────────────────────────────────────────────
Now attempting to fit the 2 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ linear : ✔
→ power : ✔
Now attempting to fit the 3 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ koba : ✔
→ ratio : ✔
[ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (20): 'test_crit_method.R:5:3', 'test_crit_method.R:96:3',
'test_grid_start.R:4:3', 'test_indiv_CIs.R:5:3', 'test_logistic.R:5:3',
'test_multi.R:4:3', 'test_multi.R:30:3', 'test_multi.R:45:3',
'test_multi.R:76:3', 'test_multi.R:89:3', 'test_p2.R:4:3',
'test_pred.R:27:3', 'test_shape.R:4:3', 'test_thresholds.R:5:3',
'test_thresholds.R:72:3', 'test_thresholds.R:94:3',
'test_thresholds.R:133:3', 'test_warnings.R:5:3', 'test_weibull3.R:4:3',
'test_weibull3.R:15:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_lin_pow.R:37:3'): lin_pow returns warning for all identical species ──
Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,
useBytes, FALSE)`: NA in coercion to boolean
Backtrace:
▆
1. └─testthat::expect_warning(...) at test_lin_pow.R:37:3
2. └─testthat:::compare_messages(...)
3. └─base::grepl(regexp, messages, ...)
── Error ('test_power.R:40:3'): sar_power returns warning for all identical species ──
Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,
useBytes, FALSE)`: NA in coercion to boolean
Backtrace:
▆
1. └─testthat::expect_warning(...) at test_power.R:40:3
2. └─testthat:::compare_messages(...)
3. └─base::grepl(regexp, messages, ...)
[ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-macos-arm64
Version: 1.3.7
Check: tests
Result: ERROR
Running 'testthat.R' [59s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(sars)
>
> test_check("sars")
Now attempting to fit the 20 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ powerR : ✔
→ epm1 : ✔
→ epm2 : ✔
→ p1 : ✔
→ p2 : ✔
→ loga : ✔
→ koba : ✔
→ monod : ✔
→ negexpo : ✔
→ chapman : ✔
→ weibull3 : ✔
→ asymp : ✔
→ ratio : ✔
→ gompertz : ✔
→ weibull4 : ✔
→ betap : ✔
→ logistic : ✔
→ heleg : ✔
→ linear : ✔
Model fitting completed - all models succesfully fitted. Now undertaking model validation checks. Additional models will be excluded if necessary:
16 remaining models used to construct the multi SAR:
Power, PowerR, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Rational function, Gompertz, Beta-P cumulative, Logistic(Standard), Heleg(Logistic)
────────────────────────────────────────────────────────────────────────────────
Now attempting to fit the 20 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ powerR : ✔
→ epm1 : ✔
→ epm2 : ✔
→ p1 : ✔
→ p2 : ✔
→ loga : ✔
→ koba : ✔
→ monod : ✔
→ negexpo : ✔
→ chapman : Warning: could not compute parameters statistics
→ weibull3 : ✔
→ asymp : ✔
→ ratio : Warning: could not compute parameters statistics
→ gompertz : ✔
→ weibull4 : Warning: could not compute parameters statistics
→ betap : Warning: could not compute parameters statistics
→ logistic : ✔
→ heleg : ✔
→ linear : ✔
No model validation checks selected
20 remaining models used to construct the multi SAR:
Power, PowerR, Extended Power model 1, Extended Power model 2, Persistence function 1, Persistence function 2, Logarithmic, Kobayashi, Monod, Negative exponential, Chapman Richards, Cumulative Weibull 3 par., Asymptotic regression, Rational function, Gompertz, Cumulative Weibull 4 par., Beta-P cumulative, Logistic(Standard), Heleg(Logistic), Linear model
────────────────────────────────────────────────────────────────────────────────
Now attempting to fit the 2 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ linear : ✔
→ power : ✔
Now attempting to fit the 3 SAR models:
── multi_sars ────────────────────────────────────────────── multi-model SAR ──
→ power : ✔
→ koba : ✔
→ ratio : ✔
[ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (20): 'test_crit_method.R:5:3', 'test_crit_method.R:96:3',
'test_grid_start.R:4:3', 'test_indiv_CIs.R:5:3', 'test_logistic.R:5:3',
'test_multi.R:4:3', 'test_multi.R:30:3', 'test_multi.R:45:3',
'test_multi.R:76:3', 'test_multi.R:89:3', 'test_p2.R:4:3',
'test_pred.R:27:3', 'test_shape.R:4:3', 'test_thresholds.R:5:3',
'test_thresholds.R:72:3', 'test_thresholds.R:94:3',
'test_thresholds.R:133:3', 'test_warnings.R:5:3', 'test_weibull3.R:4:3',
'test_weibull3.R:15:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_lin_pow.R:37:3'): lin_pow returns warning for all identical species ──
Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,
useBytes, FALSE)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─testthat::expect_warning(...) at test_lin_pow.R:37:3
2. └─testthat:::compare_messages(...)
3. └─base::grepl(regexp, messages, ...)
── Error ('test_power.R:40:3'): sar_power returns warning for all identical species ──
Error in `grepl(as.character(pattern), x, ignore.case, FALSE, perl, fixed,
useBytes, FALSE)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─testthat::expect_warning(...) at test_power.R:40:3
2. └─testthat:::compare_messages(...)
3. └─base::grepl(regexp, messages, ...)
[ FAIL 2 | WARN 0 | SKIP 20 | PASS 147 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64