SLICER: Selective Locally Linear Inference of Cellular Expression Relationships

Provides an implementation of SLICER, an algorithm for inferring cellular trajectories from single cell RNA sequencing data. See Welch, JD, Hartemink AJ, Prins JF (2016) <doi:10.1186/s13059-016-0975-3>.

Version: 0.2.0
Depends: R (≥ 2.10)
Imports: alphahull, igraph, lle, grDevices, graphics, stats
Suggests: knitr, rmarkdown
Published: 2017-08-22
Author: Joshua Welch
Maintainer: Joshua Welch <jwelch at cs.unc.edu>
License: ACM
NeedsCompilation: no
Materials: README
CRAN checks: SLICER results

Downloads:

Reference manual: SLICER.pdf
Vignettes: SLICER
Package source: SLICER_0.2.0.tar.gz
Windows binaries: r-devel: SLICER_0.2.0.zip, r-devel-gcc8: SLICER_0.2.0.zip, r-release: SLICER_0.2.0.zip, r-oldrel: SLICER_0.2.0.zip
OS X binaries: r-release: SLICER_0.2.0.tgz, r-oldrel: SLICER_0.2.0.tgz

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