ir 0.4.1
ir 0.4.0
Bug fixes
New functions
- ir_scale(): Function to scale intensity values in
spectra, similar to- base::scale(). Intensity values are
scaled for the same x axis values.
- ir_as_ir.ir_flat(): Conversion of- ir_flatobjects to- irobjects.
- ir_as_ir.hyperSpec(): Conversion of- hyperSpec::hyperSpecobjects to- irobjects.
- ir_as_ir.Spectra(): Conversion of- ChemoSpec::Spectraobjects to- irobjects.
- ir_identify_empty_spectra(): Identifies rows in an- irobject with empty spectra (former internal function- ir_check_for_empty_spectra()).
- ir_sample_prospectr(): Wrapper function to use sampling
algorithms implemented in the ‘prospectr’ package directly with ‘ir’
objects.
Improvements
- ir_correct_atmosphere()has a new parameter- return_contributionwhich allows to return the contribution
of- refto each spectrum in- x.
- ir_normalize()has three new methods to normalize
spectra:- 
- With method = "area_absolute", all intensity values
will be divided by the sum of the absolute intensity values at all
wavenumber values of the spectrum.
- With method = "vector", all intensity values will be
divided by the norm of the intensity vector (vector normalization).
- With method = "snv“, a Standard Normal Variate
correction will be performed.
 
- ir_bc_rubberband()has an additional parameter to allow
imputation of the first and last value in a spectra to avoid artifacts
which may happen during baseline correction with the rubberband
algorithm.
- All functions now fully support empty spectra.
- Several dependencies in Importshave been moved toSuggests.
- Efficiency of several functions has been improved.
ir 0.3.0
Bug fixes
- In ir_import_spc(), the returnedirobject
was not atbl_df, but a data frame. This is now
corrected.
- In unnest.ir(), theirclass was not
restored and therefore the result was always unclassed.
- In ir_average(), the returnedirobject
was still agrouped_df. This is now corrected (by adding
the.groupsargument fordplyr::summarize()which is internally used byir_average()).
New functions
- ir_export_prepare()to support exporting- irobjects to- csv.
- ir_correct_atmosphere()enables correcting for
atmospheric artifacts (e.g. H\(_2\)O
and CO\(_2\) peaks) following
Perez-Guaita et al. (2013) (DOI: 10.1366/13-07159).
Improvements
- Making ir_flatten()faster by improving spectra
combining.
- Making ir_bin()faster by improving spectra summarizing
per bin. Allowing to specify how wavenumber values should be defined
after binning.
- Arithmetic operations now also accept numeric vectors
(ir_subtract(),ir_add(),ir_multiply(),ir_divide()).
ir 0.2.1
- Circumventing a bug in ir_import_spc()by allowing to
not export spectra metadata. This bug is caused byhyperSpec::read.spc()and will be fixed in the upcoming
weeks. See https://github.com/r-hyperspec/hyperSpec/issues/80
ir 0.2.0
- First CRAN release (#1).
- Added a NEWS.mdfile to track changes to the
package.
- Added tidyverse methods for irobjects.
- irobjects no longer require columns- measurement_idand- sample_id, but only the
column- spectra.
- Added subsetting and binding methods for irobjects.
- Added arithmetic operators for irobjects.