selac: Selection Models for Amino Acid and/or Codon Evolution

Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) <doi:10.1093/molbev/msy222>.

Version: 1.7.0
Imports: ape, deSolve, nloptr, nnet, data.table, expm, MASS, Matrix, methods, parallel, phangorn, seqinr, statmod, zoo, RColorBrewer
Suggests: testthat, igraph
Published: 2019-02-28
Author: Jeremy Beaulieu [aut, cre], JJ Chai [aut], Mike Gilchrist [aut], Cedric Landerer [aut], Graham Derryberry [aut], Brian O'Meara [aut]
Maintainer: Jeremy Beaulieu <jbeaulieu at nimbios.org>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
Materials: README
CRAN checks: selac results

Downloads:

Reference manual: selac.pdf
Package source: selac_1.7.0.tar.gz
Windows binaries: r-devel: selac_1.7.0.zip, r-devel-gcc8: selac_1.7.0.zip, r-release: selac_1.7.0.zip, r-oldrel: selac_1.7.0.zip
OS X binaries: r-release: selac_1.7.0.tgz, r-oldrel: selac_1.7.0.tgz

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