umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers

Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' (<https://github.com/stahlberggroup/umierrorcorrect>).

Version:	1.0.0
Depends:	R (≥ 4.1.0)
Imports:	BiocManager, dplyr (≥ 0.7.5), DT (≥ 0.19), forcats (≥ 0.5.0), ggplot2 (≥ 2.2.1), graphics, grDevices, gridExtra (≥ 2.3), magrittr (≥ 1.5), methods, pheatmap (≥ 1.0.12), plotly (≥ 4.9.2.1), readr (≥ 1.1.1), Rsamtools (≥ 1.32.3), scales (≥ 1.1.0), shiny (≥ 1.7.1), shinydashboard (≥ 0.7.2), shinyFiles (≥ 0.9.0), shinyWidgets (≥ 0.6.2), stats, stringr (≥ 1.4.0), tibble (≥ 1.4.2), tidyr (≥ 0.8.1), utils, viridis (≥ 0.5.1)
Suggests:	knitr (≥ 1.27), rmarkdown (≥ 2.1)
Published:	2021-11-25
DOI:	10.32614/CRAN.package.umiAnalyzer
Author:	Stefan Filges [aut, cre], Gustav Johansson [ctb]
Maintainer:	Stefan Filges <stefan.filges at gu.se>
BugReports:	https://github.com/sfilges/umiAnalyzer/issues
License:	GPL-3
URL:	https://github.com/sfilges/umiAnalyzer
NeedsCompilation:	no
Language:	en-US
Materials:	README, NEWS
CRAN checks:	umiAnalyzer results

Documentation:

Reference manual:	umiAnalyzer.html , umiAnalyzer.pdf
Vignettes:	umiAnalyzer vignette (source, R code)

Downloads:

Package source:	umiAnalyzer_1.0.0.tar.gz
Windows binaries:	r-devel: umiAnalyzer_1.0.0.zip, r-release: umiAnalyzer_1.0.0.zip, r-oldrel: umiAnalyzer_1.0.0.zip
macOS binaries:	r-release (arm64): umiAnalyzer_1.0.0.tgz, r-oldrel (arm64): umiAnalyzer_1.0.0.tgz, r-release (x86_64): umiAnalyzer_1.0.0.tgz, r-oldrel (x86_64): umiAnalyzer_1.0.0.tgz

Linking:

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