A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

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Documentation for package ‘WormTensor’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AllGenerics_component	Components for WormTensor object
as_worm_tensor	Generates WormTensor object A WormTensor object is generated from distance matrices.
WormTensor-class	S4 class used by as_worm_tensor.R, worm_membership.R, worm_clustering.R, worm_evaluate.R, worm_visualize.R
worm_clustering	Components for WormTensor object
worm_clustering-method	Generates clustering result A clustering result is generated from a membership tensor.
worm_distance	Generates distance matrices Distance matrices are generated between the cells of multiple animals (Caenorhabditis elegans) from time-series matrices.
worm_download	Downloads distance matrices 28 animals' data including 24 normal and 4 noisy are retrieved from figshare.
worm_evaluate	Components for WormTensor object
worm_evaluate-method	Evaluates clustering result An evaluation result is generated from a WormTensor object.
worm_membership	Components for WormTensor object
worm_membership-method	Generates membership tensor A membership tensor is generated from distance matrices.
worm_visualize	Components for WormTensor object
worm_visualize-method	Plots evaluation result A visualization result is generated from a WormTensor object.