Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants


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Documentation for package ‘orthGS’ version 0.1.8

Help Pages

agf Angiosperms Gymnosperms Ferns
AngGym Angiosperms Gymnosperms
A_selected Adjacency Matrix for Orthology Graph
coltips Colouring Tree Tips
gapless_msa Remove Gaps in a MSA
getseqGS Get the GS Sequence
madRoot Find The Root of a Phylogenetic Tree Using MAD Method
mapTrees Map Gene Tree into Species Tree
mltree Build Up a ML Tree
msa Multiple Sequence Alignment
orthG Infer GS OrthoGroups Within a Set of Species
orthology Infer OrthoGroups Using Tree Reconciliation
orthP Search Orthologous of a Given Protein
sdf Seed Plants and Ferns GS
selected_tr Ultrametric Rooted Seed Plants Tree
speciesGS Map Species Names
subsetGS GS Proteins Report