# Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks

## Documentation for package ‘HDclust’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

HDclust-package | Clustering high dimensional data with Hidden Markov Model on Variable Blocks
clustControl | Parameters for MBM clustering algorithm.
clustModes | Hierarchical clustering of density modes
getBdim | Accessor for 'bdim' slot
getBdim-method | Accessor for 'bdim' slot
getBIC | Accessor for 'BIC' slot.
getBIC-method | Accessor for 'BIC' slot.
getClsid | Accessor for 'clsid' slot.
getClsid-method | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getClustParam | Accessor for 'clustParam' slot.
getClustParam-method | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getDiagCov | Accessor for 'diagCov' slot.
getDiagCov-method | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
getDim | Accessor for 'dim' slot
getDim-method | Accessor for 'dim' slot
getHmmChain | Accessor for 'HmmChain' slot.
getHmmChain-method | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
getHmmParam | Accessor for parameters of HMM
getHmmParam-method | Class "HMM" to represent parameters associated with a variable block in the HMM-VB
getLoglikehd | Accessor for 'Loglikehd' slot.
getLoglikehd-method | Accessor for 'Loglikehd' slot.
getNb | Accessor for 'nb' slot
getNb-method | Accessor for 'nb' slot
getNumst | Accessor for 'numst' slot
getNumst-method | Accessor for 'numst' slot
getOptHMMVB | Accessor for 'optHMMVB' slot.
getOptHMMVB-method | Class "HMMVBBIC" to represent results of HMM-VB model selection.
getPrenumst | Accessor for 'prenumst' slot
getPrenumst-method | Class "HMM" to represent parameters associated with a variable block in the HMM-VB
getSize | Accessor for 'size' slot.
getSize-method | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getVarorder | Accessor for 'varorder' slot
getVarorder-method | Accessor for 'varorder' slot
getVb | Accessor for 'VbStructure' slot.
getVb-method | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HDclust | Clustering high dimensional data with Hidden Markov Model on Variable Blocks
HMM | Class "HMM" to represent parameters associated with a variable block in the HMM-VB
HMM-class | Class "HMM" to represent parameters associated with a variable block in the HMM-VB
HMMVB | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HMMVB-class | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HMMVBBIC | Class "HMMVBBIC" to represent results of HMM-VB model selection.
hmmvbBIC | BIC for HMM-VB
HMMVBBIC-class | Class "HMMVBBIC" to represent results of HMM-VB model selection.
HMMVBclust | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
hmmvbClust | Cluster data with HMM-VB
HMMVBclust-class | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
hmmvbFindModes | Find density modes with HMM-VB
hmmvbTrain | Train HMM-VB
plot-method | Class "HMMVBBIC" to represent results of HMM-VB model selection.
plot-method | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
show-method | Class "HMM" to represent parameters associated with a variable block in the HMM-VB
show-method | Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
show-method | Class "HMMVBBIC" to represent results of HMM-VB model selection.
show-method | Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
show-method | Class "VB" to represent a variable block structure.
sim2 | Synthetic dataset used in section 5.1.2 of the reference paper.
sim3 | Synthetic dataset used in section 5.1.3 of the reference paper
trainControl | Parameters for HMM-VB training.
VB | Class "VB" to represent a variable block structure.
vb | Make an instance of class "VB"
VB-class | Class "VB" to represent a variable block structure.
vbSearchControl | Parameters for variable block structure search.