Differential Pattern Analysis via Linear Modeling

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Documentation for package ‘DiPALM’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

DiPALM-package	DiPALM - Differential Pattern Analysis via Linear Modeling
AdjustPvalue	Determine p-values based on permutation test results
BlankPlot	Generate a blank plot window
BuildLimmaLM	Fit linear models to time-course expression patterns using the limma package
BuildModMembership	Calculate module membership (kME) for all genes in a time-course data set
DiPALM	DiPALM - Differential Pattern Analysis via Linear Modeling
exampleData	Example Data: Data for use with the DiPALM vignette
ggPlotMultiDensities	Plot multiple density distributions
PlotTCs	Plot multiple time-course expression patterns for one gene
PlotTCsRibbon	Plot multiple averaged time-course expression patterns for a group of genes
testData	Test Data: Data for function testing