# Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

## Documentation for package ‘OncoSubtype’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

centroids_subtype | Predict the subtypes of selected cancer type based published papers
example_fpkm | example FPKM data
get_hvg | select highly variable genes from a expression matrix
get_median_centered | convert expression matrix to median-centered
get_rf_pred | Predict the subtypes of selected cancer type
hnsc_centroids | HNSC predictor centroids
load_dataset_from_github | Load Dataset from GitHub Repository
luad_centroids | LUAD predictor centroids
lusc_centroids | LUSC predictor centroids
ml_subtype | Predict the subtypes of selected cancer type using machine learning
PlotHeat | Plot heatmap of the train set or test set
SubtypeClass | Set the SubtypeClass
SubtypeClass-class | Set the SubtypeClass