Find Matches to Canonical SiRNA Seeds in Genomic Features

---

Documentation for package ‘SeedMatchR’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

check_gene_list_overlap	Check if input gene lists overlap
deseq_fc_ecdf	Plot the ECDF for DESeq2 log2(Fold Changes)
download_parse_file	Download and parse DESeq2 output from GSE184929
ecdf_stat_test	Test for differences in log2(Fold Change) ECDFs between two gene lists using the 'stats' package
filter_deseq	Filter DESEQ2 Results for SeedMatchR
get_example_data	Download example DESeq2 data from GEO
get_feature_seqs	Get transcripts features and feature sequences
get_seed	Get the target seed sequence given a canonical seed name and input sequence
load_example_data	Load example DESeq2 data into the environment
load_species_anno_db	Load species specific 'AnnotationDb'
plot_seeds	Plot the Guide Strand with different optional seeds
SeedMatchR	Find seed matches in genomic features