Rapid Manipulation of the Variant Call Format (VCF)

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Documentation for package ‘vcfppR’ version 0.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

vcfppR-package	vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
vcfcomp	Compare two VCF/BCF files reporting various statistics
vcfinfo	read a INFO tag in the VCF/BCF into R data structure
vcfplot	Make sensible and beautiful plots based on various objects in vcfppR
vcfpopgen	count the heterozygous sites per sample in the VCF/BCF
vcfppR	vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
vcfreader	API for manipulating the VCF/BCF.
vcfsummary	summarize the various variant types at both variant level and sample level.
vcftable	read VCF/BCF contents into R data structure
vcfwriter	API for writing the VCF/BCF.