Package: SIEVEseq
Title: Unified Differential Expression, Variability and Skewness
        Analysis for RNA-Seq Data
Version: 0.0.0
Date: 2026-06-07
Authors@R: c(
    person("Hongxiang", "Li", email = "hxli@ynnu.edu.cn", role = c("aut", "cre")),
    person("Tsung Fei", "Khang", email = "tfkhang@um.edu.my", role = "aut"))
Maintainer: Hongxiang Li <hxli@ynnu.edu.cn>
Description: Provides a unified framework for the simultaneous testing
    of differential expression, variability, and skewness of genes using
    RNA-Seq data. The framework adopts a compositional data analysis
    approach for modelling RNA-Seq count data, applies the centered
    log-ratio transformation to obtain continuous variables, and
    uses the skew-normal distribution for statistical inference. 
    Methods are described in Li and Khang (bioRxiv preprint, 2024, version 3) 
    <doi:10.1101/2024.04.09.588804>.
Depends: R (>= 4.1)
Imports: sn, stats, ggplot2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/Divo-Lee/SIEVEseq
License: GPL (>= 2)
Encoding: UTF-8
LazyData: TRUE
Config/roxygen2/version: 8.0.0
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-06-22 14:21:19 UTC; chels
Author: Hongxiang Li [aut, cre],
  Tsung Fei Khang [aut]
Repository: CRAN
Date/Publication: 2026-06-25 16:10:09 UTC
Built: R 4.5.3; ; 2026-08-05 13:00:16 UTC; windows
