# Visually Exploring Random Forests

## Documentation for package ‘ggRandomForests’ version 3.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A C G K N P Q S V

ggRandomForests-package | ggRandomForests: Visually Exploring Random Forests

## -- A --

autoplot.gg | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_brier | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_error | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_isopro | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partialpro | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial_rfsrc | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_partial_varpro | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_rfsrc | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_roc | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_shap | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_survival | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_udependent | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_variable | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_varpro | 'autoplot' methods for 'ggRandomForests' data objects
autoplot.gg_vimp | 'autoplot' methods for 'ggRandomForests' data objects

## -- C --

calc_auc | Area Under the ROC Curve calculator
calc_auc.gg_roc | Area Under the ROC Curve calculator
calc_roc | Receiver Operator Characteristic calculator
calc_roc.randomForest | Receiver Operator Characteristic calculator
calc_roc.rfsrc | Receiver Operator Characteristic calculator

## -- G --

gg_beta_uvarpro | Per-variable lasso-beta importance from an unsupervised varPro fit
gg_beta_varpro | Per-variable lasso-beta importance from a varPro fit
gg_brier | Brier score and CRPS for survival forests
gg_error | Random forest error trajectory data object
gg_error.randomForest | Random forest error trajectory data object
gg_error.randomForest.formula | Random forest error trajectory data object
gg_error.rfsrc | Random forest error trajectory data object
gg_isopro | Tidy data from a varPro isolation-forest fit
gg_ivarpro | Individual (local) variable importance from a varPro fit
gg_partial | Split partial dependence data into continuous or categorical datasets
gg_partialpro | Partial dependence data from a varPro model
gg_partial_rfsrc | Partial dependence data from an rfsrc model
gg_partial_varpro | Partial dependence data from a varPro model
gg_rfsrc | Predicted response data object
gg_rfsrc.rfsrc | Predicted response data object
gg_roc | ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_roc.randomForest | ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_roc.rfsrc | ROC (Receiver Operating Characteristic) curve data from a classification forest.
gg_sdependent | Signal-variable detection from an unsupervised varPro fit
gg_shap | SHAP (Shapley additive explanations) data object
gg_shap.randomForest | SHAP (Shapley additive explanations) data object
gg_shap.rfsrc | SHAP (Shapley additive explanations) data object
gg_survival | Nonparametric survival estimates.
gg_survival.default | Nonparametric survival estimates.
gg_survival.rfsrc | Nonparametric survival estimates.
gg_udependent | Variable dependency graph from a uvarpro model
gg_variable | Marginal variable dependence data object.
gg_variable.random | Marginal variable dependence data object.
gg_variable.randomForest | Marginal variable dependence data object.
gg_variable.rfsrc | Marginal variable dependence data object.
gg_varpro | Variable importance data from a varPro model
gg_vimp | Variable Importance (VIMP) data object
gg_vimp.randomForest | Variable Importance (VIMP) data object
gg_vimp.randomForest.formula | Variable Importance (VIMP) data object
gg_vimp.rfsrc | Variable Importance (VIMP) data object

## -- K --

kaplan | nonparametric Kaplan-Meier estimates

## -- N --

nelson | nonparametric Nelson-Aalen estimates

## -- P --

plot.gg_beta_uvarpro | Plot a 'gg_beta_uvarpro' object
plot.gg_beta_varpro | Plot a 'gg_beta_varpro' object
plot.gg_brier | Plot a 'gg_brier' object
plot.gg_error | Plot a 'gg_error' object
plot.gg_isopro | Plot a varPro isolation-forest anomaly score
plot.gg_ivarpro | Plot a 'gg_ivarpro' object
plot.gg_partial | Plot a 'gg_partial' object
plot.gg_partialpro | Plot a 'gg_partial_varpro' object
plot.gg_partial_rfsrc | Plot a 'gg_partial_rfsrc' object
plot.gg_partial_varpro | Plot a 'gg_partial_varpro' object
plot.gg_rfsrc | Predicted response plot from a 'gg_rfsrc' object.
plot.gg_roc | ROC plot generic function for a 'gg_roc' object.
plot.gg_sdependent | Plot a 'gg_sdependent' object
plot.gg_shap | Plot a 'gg_shap' object
plot.gg_survival | Plot a 'gg_survival' object.
plot.gg_udependent | Plot a 'gg_udependent' variable dependency graph
plot.gg_variable | Plot a 'gg_variable' object,
plot.gg_varpro | Plot a 'gg_varpro' variable importance object
plot.gg_vimp | Plot a 'gg_vimp' object, extracted variable importance of a 'rfsrc' object
print.gg | Print methods for gg_* data objects
print.gg_beta_uvarpro | Print methods for gg_* data objects
print.gg_beta_varpro | Print methods for gg_* data objects
print.gg_brier | Print methods for gg_* data objects
print.gg_error | Print methods for gg_* data objects
print.gg_isopro | Print methods for gg_* data objects
print.gg_ivarpro | Print methods for gg_* data objects
print.gg_partial | Print methods for gg_* data objects
print.gg_partialpro | Print methods for gg_* data objects
print.gg_partial_rfsrc | Print methods for gg_* data objects
print.gg_partial_varpro | Print methods for gg_* data objects
print.gg_rfsrc | Print methods for gg_* data objects
print.gg_roc | Print methods for gg_* data objects
print.gg_sdependent | Print methods for gg_* data objects
print.gg_shap | Print methods for gg_* data objects
print.gg_survival | Print methods for gg_* data objects
print.gg_udependent | Print methods for gg_* data objects
print.gg_variable | Print methods for gg_* data objects
print.gg_varpro | Print methods for gg_* data objects
print.gg_vimp | Print methods for gg_* data objects
print.summary.gg | Summary methods for gg_* data objects
print.summary.gg_udependent | Print methods for gg_* data objects

## -- Q --

quantile_pts | Quantile-based cut points for coplots

## -- S --

shap_beeswarm | SHAP beeswarm summary plot
shap_dependence | SHAP dependence plot
shap_importance | SHAP global importance bar chart
summary.gg | Summary methods for gg_* data objects
summary.gg_beta_uvarpro | Summary methods for gg_* data objects
summary.gg_beta_varpro | Summary methods for gg_* data objects
summary.gg_brier | Summary methods for gg_* data objects
summary.gg_error | Summary methods for gg_* data objects
summary.gg_isopro | Summary methods for gg_* data objects
summary.gg_ivarpro | Summary methods for gg_* data objects
summary.gg_partial | Summary methods for gg_* data objects
summary.gg_partialpro | Summary methods for gg_* data objects
summary.gg_partial_rfsrc | Summary methods for gg_* data objects
summary.gg_partial_varpro | Summary methods for gg_* data objects
summary.gg_rfsrc | Summary methods for gg_* data objects
summary.gg_roc | Summary methods for gg_* data objects
summary.gg_sdependent | Summary methods for gg_* data objects
summary.gg_shap | Summary methods for gg_* data objects
summary.gg_survival | Summary methods for gg_* data objects
summary.gg_udependent | Summary methods for gg_* data objects
summary.gg_variable | Summary methods for gg_* data objects
summary.gg_varpro | Summary methods for gg_* data objects
summary.gg_vimp | Summary methods for gg_* data objects
surv_partial.rfsrc | Survival partial dependence data for one or more predictors

## -- V --

varpro_feature_names | Recover original variable names from varpro one-hot encoded feature names