# Read Stable Isotope Data Files

## Documentation for package ‘isoreader2’ version 0.7.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

isoreader2-package | isoreader2: Read Stable Isotope Data Files
auto | Automatic / default behavior
c.ir_aggregated_data | Combine aggregated isofile data
c.ir_isofiles | Combine isofiles
get_pkg_options | Package options
ir_add_to_aggregator | Dynamic data aggregator
ir_aggregate_isofiles | Aggregate data from isofiles
ir_calculate_ratios | Calculate isotope ratios
ir_check_isoextract | Check for the isoextract executables
ir_check_isosolfs | Check for the isoextract executables
ir_convert_intensity | Convert intensity between units
ir_copy_examples | Bundled example files
ir_default_theme | Default isoreader2 plotting theme
ir_examples_folder | Bundled example files
ir_export_to_excel | Export data to Excel
ir_extract_isofiles | run the isoextract executable on a vector of file paths this is usually not called directly
ir_filter_for | Filter isofiles by measurement type
ir_filter_for_continuous_flow | Filter isofiles by measurement type
ir_filter_for_dual_inlet | Filter isofiles by measurement type
ir_filter_for_scans | Filter isofiles by measurement type
ir_filter_masses | Filter isofiles by mass
ir_filter_metadata | Filter, mutate, or join the metadata of isofiles
ir_find_continuous_flow | Find isodat files
ir_find_dual_inlet | Find isodat files
ir_find_isofiles | Find isodat files
ir_find_scans | Find isodat files
ir_generate_cycles_tibble | Generate the tibble used by the plotting functions
ir_generate_scans_tibble | Generate the tibble used by the plotting functions
ir_generate_tibble | Generate the tibble used by the plotting functions
ir_generate_traces_tibble | Generate the tibble used by the plotting functions
ir_get_aggregator | Dynamic data aggregator
ir_get_cycles | Get data frame from aggregated data
ir_get_data | Get data frame from aggregated data
ir_get_isoextract_version | run the isoextract executable on a vector of file paths this is usually not called directly
ir_get_metadata | Get data frame from aggregated data
ir_get_option | Package options
ir_get_options | Package options
ir_get_problems | Retrieve parsing problems
ir_get_resistors | Get data frame from aggregated data
ir_get_scans | Get data frame from aggregated data
ir_get_supported_file_types | Get supported file types
ir_get_traces | Get data frame from aggregated data
ir_get_vendor_data_table | Get data frame from aggregated data
ir_isofiles_storage | Save and load isofiles
ir_join_metadata | Filter, mutate, or join the metadata of isofiles
ir_load_aggregated_data | Save and load aggregated isofile data
ir_load_isofiles | Save and load isofiles
ir_metadata | Filter, mutate, or join the metadata of isofiles
ir_mutate_metadata | Filter, mutate, or join the metadata of isofiles
ir_options | Package options
ir_plot_continuous_flow | Plot trace data
ir_plot_dual_inlet | Plot dual inlet cycle data
ir_plot_scans | Plot scan data
ir_plot_traces | Plot trace data
ir_read_isofiles | Read isotope data files
ir_register_aggregator | Dynamic data aggregator
ir_save_aggregated_data | Save and load aggregated isofile data
ir_save_isofiles | Save and load isofiles
ir_show_problems | Retrieve parsing problems
ir_start_aggregator | Dynamic data aggregator
ir_storage | Save and load aggregated isofile data
isoreader2 | isoreader2: Read Stable Isotope Data Files