# rice 2.2.2
* `draw.dates` now plots the vertical axis correctly when `oncurve=TRUE` (which plots the radiocarbon dates on the calibration curve), and has a new option `curve.lim` (axis limits, calculated automatically when left empty).
* new function `C14.cycle` which simulates the accumulation of 14C into the atmosphere and ocean over time. We start with 0% 14C in any of the reservoirs, and 14C builds up each year (but also decays at a constant rate). 14C is transferred to the ocean, and over time the amount of 14C as well as the 14C/12C ratios in each of the reservoirs change.
* downloaded the latest (May 2026) update of calib.org/marine/ 
* the `point.estimates` and `hpd` functions now can also deal with variables such as `rnorm(1000)` or Bacon output such as `Bacon.Age.d(20)`.
* added citation to Blaauw & Reimer 2026 (Radiocarbon), which describes the `rice` package.

# rice 2.2.1
* `draw.dates` now plots calibrated dates correctly also if cc>1.
* `draw.dates` now plots any labels to the left, middle or right of calibrated dates. Alternatively, the x and/or y coordinates of the labels can be specified, e.g., `labels.x=seq(1000, 0, length=length(y))`.
* the `draw=FALSE` option in `calibrate` no longer throws an error.
* made the installation of audio/tuneR packages for the `radio` function more user-friendly.

# rice 2.2.0
* postbomb dates are now plotted better in the `calibrate` function when using the option `glue`.
* added the `glue` option to additional relevant functions such as `draw.dates`, `l.calib`, `r.calib`, `younger`, `older`, `p.range` and timescale-related functions (e.g., `calBPtoC14`, `C14tocalBP`).
* to use a monthly postbomb calibration curve, try e.g. `calibrate(1.4, .005, is.F=TRUE, glue="NH1_monthly", BCAD=TRUE)`.
* `calibratable` now calibrates dates faster by not reading in the same curve multiple times.
* `draw.dates` now draws its distributions at more predictable peak heights.
* updated the Hallstatt Plateau / Joy Division / Jocelyn Bell Burnell graph of the vignette.
* `fromto` now has more predictable axis limits and drawing of calibration curves.
* `howmuchC14` now invisibly reports both the number of remaining C14 atoms and the count rate per second at the detector. More information has been added in the documentation for this function. The function also gains an option `is.F` for values entered as F14C instead of as 14C BP. 
* new function `radio` to listen to (and view) C-14 being detected in an AMS (or registered as decays for radiometric measurement).
* better rounding within the `muck` function.

# rice 2.1.0
* added a function to plot the c. 175k dates available within the p3k14c github R package (Bird et al. 2022). Note that p3k14c is not available on CRAN (too large) but it's on github. 
* new option in `hpd` function to pad distributions with 0s at each end. This can be useful for 'open-ended' distributions.
* cleaned up 'orphan' variables (which were created but not used within functions).

# rice 2.0.1
* placed angle brackets around dois in DESCRIPTION as per CRAN request.

# rice 2.0.0
* now cites the accompanying publication, Blaauw M & Reimer PJ (in press) An open-source toolkit for radiocarbon dating and calibration. Radiocarbon
* re-downloaded the data from the calib.org/marine database after corrections were released on 12 March 2026.
* updated the documentation of `caldist` for the option `bombalert`. 
* `caldist` now uses the F14C timescale by default (more accurate for dates with large errors, e.g. old dates).
* new option `glue` in `caldist` and derivatives `calibrate` and `calibratable`. This enables users to combine e.g. IntCal20 and postbomb-curve NH1, NH2 or NH3, or SHCal20 and SH1-2 or SH3 (glue=1, 2, 3, 4 or 5, respectively). The default is 'glue=0', i.e., no glueing of prebomb and postbomb calibration curves. 
* Deprecated `pMC.age`, `age.pMC`, `F14C.age` and `age.F14C` (instead, please use `pMCtoC14`, `C14topMC`, `F14CtoC14`, or `C14toF14C` respectively).
* `draw.ccurve` now has more predictable vertical axis limits when `BCAD=TRUE`, and can now deal with options `is.F`, `is.pMC` and `glue` besides `timescale`.
* colour options in `calibrate` and `draw.dates` have been changed to refer to e.g. `dist.col` for the filling colour of the distribution, and `dist.border` for the colour of its border. The border colours default to whatever the main colour (i.e. of the filling) is.

# rice 1.6.2
* updated the test-rice R file to reflect the correct find.shells results.

# rice 1.6.1
* changes to mentions of `rnaturalearthhires` for high-resolution maps, as per CRAN request.
* caldist now calculates values better when `student.t=TRUE`. 
* the `shells` dataset now has correct feeding ecology labels.

# rice 1.6.0
* updated the download from the calib.org marine database (which was last updated 8 November 2025).
* Changed the `positive` option's default within the `span` function to TRUE.
* `calibrate(1.5, .025, is.F=TRUE, postbomb=1, thiscurve=glue.ccurves(, postbomb="NH1_monthly"), BCAD=TRUE)` no longer throws an error.
* `F14CtoC14` now deals better with low F14C values (i.e., smaller than their lab errors).
* Added Paula Reimer and Vegard Martinsen as package contributors.
* howmuchC14 now calculates more realistic estimates of AMS counts. 
* renamed `calibrate.table` to `calibratable`.

# rice 1.5.0
* new function `calibrate.table` which produces a table with the hpd calibrated ranges of radiocarbon dates, together with any aspects such as age offsets or different calibration curves. This table is produced as a web-page which can then be copied into e.g. an MS-Word document (inspired by comments from Vegard Martinsen, NMBU, Norway).
* The heights and colours of the calibrated distributions in `draw.dates` should now be plotted more predictably.
* smoothing now works as expected when doing `mycc <- smooth.ccurve(smooth=50); calibrate(thiscurve=mycc)`.
* removed the `coverage` function since the `overlap` and `hpd.overlap` functions already calculate similar estimates. 
* hpd ranges are now reported forward in time, also when the ages are in AD.
* new function `age.range` which calculates quantile age ranges (e.g., for 95\%, it'll report the range between 2.5\% and 97.5\%).
* added option to reverse calendar axis for functions where this is relevant (`cal.rev`).

# rice 1.4.0
* renamed `realm` to the more accurate term `timescale` (and renamed BC/AD to cal BC/AD where relevant).
* renamed D14C to the more correct Delta14C in functions such as `calBPtoDelta14C`.
* `BCADtoDelta14C` and `b2ktoDelta14C` now calculate Delta14C values correctly.
* The `map.shells` and `find.shells` functions have a new option `feeding` which can be used to limit the results to shells with a specific feeding ecology, e.g., `map.shells(53, -11, feeding="suspension")`.

# rice 1.3.0
* `caldist` now deals better with uncalibrated distributions (`cc=0`).
* Where relevant, timescale-related functions such as `C14toF14C` now have more flexibility regarding rounding of values. The default is no rounding. 
* new function `draw.CF` to visualise the relationship between 14C ages and their F values, and how ages with large errors become skewed/asymmetric.
* the functions which use random samples (e.g., `contaminate`) now have the option for a seed to be set.
* the function `muck` now not only returns the percentage of contamination required to to from an observed age to a target one (and an assumed F14C of the contamination). As an alternative, if the percentage of contamination is known, then the required F14C of the contamination can be returned.
* The functions `F14CtoC14` and `C14toF14C` can now also be called with shorter names - `FtoC` and `CtoF`, respectively.
* `draw.ccurve` now plots the title of the second axis (when `add.yaxis=TRUE`).
* new function `coverage` which calculates to what degree a distribution A is covered by (i.e., falls within) another distribution B. This could be used to check for example how well an age estimate from an age-model fits with a calibrated date. If both overlap, even if the date has a much wider distribution than the model estimate, then the coverage is high (even if the total overlap between the narrow and wider distributions is much less than 100\%). 
* new function `hpd.overlap` which checks if any of the highest posterior density (hpd) intervals of two distributions overlap. Returns TRUE if any of the hpd ranges overlap, FALSE if not.
* the function `fractions` now calculates a combined age if the weights, percentage carbon and ages of all fractions are provided. 

# rice 1.2.0
* new timescale functions to convert from/to b2k (years before AD 2000), an age scale popular in the ice core community.
* new optional browsable plots for `find.shells` and `map.shells` functions. Use `browse=TRUE`. Requires Internet connection. 
* The `find.shells` and `map.shells` functions now also offer to plot a browsable maps of (current) ocean currents. This to help interpret which shells would be most representative of different ocean water masses. Requires Internet connection. 
* titles of contaminate plots are now plotted inside of the device range.
* new functions `adjust.fractionation` and `adjust.background` to correct for fractionation and background values (still experimental).
* the `calibrate` function now draws correctly when is.pMC=TRUE.
* the `overlapping` function can now calculate the overlap between either radiocarbon ages or distributions (the latter should be provided as lists).
* the function `D14CtoC14` had a bug that misinterpreted columns - should work better now.
* added testthat functions to facilitate debugging.

# rice 1.1.1
* added a secondary y axis to the `contaminate`, `clean` and `muck` plots.
* additional R packages for plotting maps are now only installed and loaded when required.
* added the latest entries from the calib.org/marine database (2 April 2025). 
* draw.dates now doesn't throw an error when ka=TRUE, and also works better when rotate.axes=TRUE.
* hpd gains an option `bins` to provide the minimum number of bins in a distribution before hpds are calculated. Any distributions with fewer bins get recalculated using a narrower binsize (equating to 100 equally-spaced bins).
* added a function `span` to calculate (calibrated) time-spans between two radiocarbon dates.
* repaired a bug in C14tocalBP which caused NAs for some cal BP values.
* a function `overlapping` calculates to what degree two calibrated dates are overlapping.
* within the timescale-related functions, changed the rounding procedure from `signif` to `round`. 
* added a function `fromto` that translates values into different domains, and plots them.
* calibrated distributions are now drawn in more consistent ways (e.g., direction up/down, height).

# rice 1.0.0
* corrected a bug in `C14topMC` where errors were not calculated correctly.
* caldist now always glues a postbomb curve to a prebomb if postbomb is not FALSE.
* new functions `push.normal` and `push.gamma` to push a date to younger or older ages by adding/subtracting a normal resp. gamma distribution.
* reservoir effect (deltaR, deltaSTD) options have been added to functions where this is relevant.
* added more warnings to `calibrate` for very old dates.
* calibrated distributions are now plotted more consistently between functions.
* added uncertainty estimates to the `clean`, `contaminate` and `muck` functions, using Monte Carlo-based sampling.
* Some of the timescale functions translating to D14C space didn't handle multiple entries well. This should work correctly now.
* `find.shells` and `map.shells` now deal better with missing mapping-related packages.

# rice 0.4.0
* the `contaminate` function now also produces a plot, and more details of the calculations.
* the `decontaminate` function has been renamed to `clean` and has been updated with clearer messages; it now removes contamination to calculate the true/target age. A plot is made, and calculation details are provided.
* new function `muck` to calculate how much contamination has to be inferred to go from an observed age to a true/target age. A plot is made, and calculation details are provided.
* new functions `C14tocalBP` and `C14toBCAD`. Since these rely on the outdated 'intercept calibration' method, these functions are provided for illustrative purposes only.
* draw.dates can now also plot the dates on the calibration curve, using the `oncurve` option. If so, then the curve and dates can also be plotted in the `F14C` or `pMC` timescales.
* New function `r.calib` that samples random calendar ages from a calibrated distribution.
* new function `p.range` to calculate a calibrated age's probability of lying between a range of BC/AD or cal BP ages.
* new function `as.one` to calculate the product of multiple calibrated ages, assuming that they all stem from (exactly) the same calendar age. Not that this is dangerous, and care should be taken to make sure that the assumptions are met.
* new function `as.bin` to calculate how many of a set of calibrated radiocarbon dates fall into bins of a specified width. The bin moves along the range of calibrated ages, to visualise how many dates fit bins over time. This would be safer than using the function `as.one`. 
* new function `spread` shows the spread (in calendar years) of a set of dates. Accompanies the functions `pool` and `as.one`.

# rice 0.3.0
* hpd ranges are now calculated at a specified precision (defaults to yearly)
* new function `BCADto14C` to calculate the 14C age belonging to a BC/AD age (this calls the function `calBPto14C`)
* new option `as.F` to calibrate in the F14C timescale (the default remains to calibrate in the C14 timescale)
* warnings are printed on calibrate() plots if dates are truncated and edge=TRUE (with the default edge=FALSE, dates that are truncated are not calibrated). The printed warning can be removed by setting `print.truncate.warning=FALSE`
* renaming `age.F14C`, `F14C.age`, `age.pMC` and `pMC.age` to, respectively, `C14toF14C`, `F14CtoC14`, `C14topMC` and `pMCtoC14`. This because `age` is an ambivalent term in this context
* new functions `BCADtocalBP` and `calBPtoBCAD` to transfer cal BP into BC/AD ages and vice versa. Can deal with (e.g. Gregorian/Julian) calendars which do not include 0
* new functions to translate between any of the timescales `calBP`, `BCAD`, `C14`, `F14C`, `pMC` and `D14C`.
* new function `smooth.ccurve` to smooth a calibration curve using a moving window of a specified width. This can be useful to calibrate material that is known to have accumulated, say, over two decades
* new function `pool` which calculates the chi2 and accompanying p-value for a set of multiple measurements on the same sample. If the scatter between the values is low enough for the p-value to be below a threshold, then the pooled mean and uncertainty are returned
* the function draw.dates now has an option `oncurve` to draw the dates onto the calibration curve.
* added dataset `shroud`, which contains replicate radiocarbon measurements on the Shroud of Turin, from three labs.
* new function `decontaminate` to estimate the percentage of contamination needed to explain the difference between a 'real' and an 'observed' radiocarbon age.

# rice 0.2.0
* added an option `bombalert` to the calibrate function. If set to false, plots ages close to 0 C14 BP without warnings.
* added the data from the marine database (calib.org/marine), as data `shells`
* new functions `find.shells` and `map.shells` to plot shells data in maps based on their coordinates
* new function `shells.mean` to plot deltaRs of selected shells, and calculate a weighted mean deltaR
* new function `weighted_means` to calculate weighted means and errors for multiple radiocarbon dates (or delta R values)
* repaired a bug in `draw.D14C`
* `draw.ccurve` now can plot the C14 in the timescales of C14 BP, F14C, pMC and D14C using the `timescale` option.

# rice 0.1.1
* added citation information
* added a function `older`
* added a vignette

# rice 0.1.0
* The first release of the rice package. It separates the calibration functions from its parent data package rintcal, which in the future will contain the IntCal and other calibration curve data only.
