# Comprehensive Database for Pathway Enrichment Analysis

## Documentation for package ‘pathdb’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

connect_database | Query Bioinformatics Database
convert_id | Convert Gene IDs to Ensembl
get_genes | Get Gene Information
get_pathways | Get Species Pathways
get_table | Get Table from Selected Database
hypoxia_deseq | Hypoxia Data Differential Expression Analysis Results
hypoxia_reads | Hypoxia Data Gene Counts
hypoxia_T2G | Example KEGG Pathway Mapping for Hypoxia
list_tables | List Table Options
path_categories | Retrieve Pathway Categories
path_filter | Filter Pathway Information By Category
process_data | Process Gene Expression Data
search_species | Search for Species by Name
T2G_prep | TERM2GENE Data Prep for iDEP Database