| as.data.frame.TP | Coerce TP object to data.frame | 
| countValid | Count valid observations per time point for a given trait | 
| countValidPlot | Count valid observations per plotId for a given trait | 
| createTimePoints | Create an object of class TP | 
| detectSerieOut | Detect outliers for series of observations | 
| detectSingleOut | Detect outliers for single observations | 
| detectSingleOutMaize | detectSingleOutMaize | 
| estimateSplineParameters | Extract estimates from fitted splines. | 
| fitModels | Fit spatial models per time point | 
| fitSpline | Fit Splines | 
| fitSplineHDM | Fit P-Spline Hierarchical Curve Data Models | 
| getCorrected | Extract corrected phenotypic values | 
| getEffDims | Extract effective dimensions | 
| getGenoPred | Extract predicted genotypic values | 
| getHerit | Extract heritabilities | 
| getTimePoints | Extract time points | 
| getVar | Extract variances | 
| noCorrectedRoot | Root data corrected for outliers for single observations. | 
| PhenoarchDat1 | Greenhouse data for a maize experiment in the PhenoArch platform. | 
| PhenovatorDat1 | Growth chamber data for an Arabidopsis experiment in the Phenovator platform. | 
| plot.fitMod | Plot function for class fitMod | 
| plot.HTPSpline | Plot the results of a fitted spline. | 
| plot.psHDM | Plot function for class psHDM | 
| plot.serieOut | Plot outliers for series of observations | 
| plot.singleOut | Plot outliers for single observations | 
| plot.splineEst | Plot the results of estimated spline parameters. | 
| plot.TP | Plot function for class TP | 
| predict.psHDM | Predict the P-Splines Hierarchical Curve Data Model | 
| removeSerieOut | Replace outliers for series of observations by NA | 
| removeSingleOut | Replace outliers for single observations by NA | 
| removeTimePoints | Remove time points from an object of class TP | 
| RootDat1 | Greenhouse data for an experiment in the RootPhAir platform. | 
| spatCorrectedArch | Maize data corrected for spatial trends. | 
| spatCorrectedVator | Arabidopsis data corrected for spatial trends. | 
| spatPredArch | Maize data, genotypic predictions. | 
| summary.fitMod | Summary function for fitMod objects | 
| summary.TP | Summary function for TP objects |