Last updated on 2026-03-15 01:49:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 7.24 | 880.62 | 887.86 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 4.12 | 598.22 | 602.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 13.00 | 1069.62 | 1082.62 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 12.00 | 1413.06 | 1425.06 | ERROR | |
| r-devel-macos-arm64 | 1.1.1 | 2.00 | 134.00 | 136.00 | OK | |
| r-devel-windows-x86_64 | 1.1.1 | 9.00 | 546.00 | 555.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 7.40 | 827.98 | 835.38 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 5.28 | 832.23 | 837.51 | OK | |
| r-release-macos-arm64 | 1.1.1 | 2.00 | 136.00 | 138.00 | OK | |
| r-release-macos-x86_64 | 1.1.1 | 5.00 | 454.00 | 459.00 | OK | |
| r-release-windows-x86_64 | 1.1.1 | 9.00 | 530.00 | 539.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 2.00 | 135.00 | 137.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.1.1 | 5.00 | 622.00 | 627.00 | WARN | |
| r-oldrel-windows-x86_64 | 1.1.1 | 13.00 | 792.00 | 805.00 | NOTE |
Version: 1.1.1
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [15m/22m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(CohortCharacteristics)
>
> test_check("CohortCharacteristics")
Starting 2 test processes.
> test-plotCohortTiming.R: i The following estimates will be calculated:
> test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density
> test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-plotCohortTiming.R: > Start summary of data, at 2026-03-14 19:55:04.387553
> test-plotCohortTiming.R: v Summary finished, at 2026-03-14 19:55:05.876387
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
> test-plotCohortTiming.R: `result_id` is not present in result.
Saving _problems/test-plotCohortTiming-245.R
> test-plotCohortAttrition.R: i The following estimates will be calculated:
> test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max
> test-plotCohortAttrition.R: * cohort_start_date: min, q25, media
> test-plotCohortAttrition.R: n, q75, max
> test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-plotCohortAttrition.R: > Start summary of data, at 2026-03-14 19:55:47.232282
> test-plotCohortAttrition.R: v Summary finished, at 2026-03-14 19:55:47.579412
> test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1)
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ...
> test-plotLargeScaleCharacteristics.R: Formatting result
> test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCohortOverlap.R: Cohort table is empty: returning empty summarised result.
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCohortOverlap.R: `result_id` is not present in result.
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCohortTiming.R: Cohort table is empty: returning empty summarised timing result.
> test-summariseCharacteristics.R: i summarising cohort cohort_3
> test-summariseCohortTiming.R: i The following estimates will be calculated:
> test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density
> test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:03.070329
> test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:06.493119
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: i summarising cohort cohort_3
> test-summariseCohortTiming.R: i The following estimates will be calculated:
> test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max
> test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side
> test-summariseCohortTiming.R: > Start summary of data, at 2026-03-14 20:05:46.521651
> test-summariseCohortTiming.R: ======>------------------------ 1/5 group-strata combinations @ 2026-03-14 20...
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCohortTiming.R: ============>------------------ 2/5 group-strata combinations @ 2026-03-14 20...
> test-summariseCohortTiming.R: ==============================> 5/5 group-strata combinations @ 2026-03-14 20...
> test-summariseCohortTiming.R: v Summary finished, at 2026-03-14 20:05:50.528963
Saving _problems/test-summariseCohortTiming-63.R
> test-utilities.R: `group` is not present in settings.
> test-utilities.R: `group` is not present in settings.
> test-utilities.R: `group` is not present in settings.
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0`
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectCount 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectDate 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding tableIntersectDays 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort exposed
> test-summariseCharacteristics.R: i summarising cohort unexposed
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
> test-summariseCharacteristics.R: i adding demographics columns
> test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1
> test-summariseCharacteristics.R: window names casted to snake_case:
> test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1`
> test-summariseCharacteristics.R: i summarising data
> test-summariseCharacteristics.R: i summarising cohort cohort_1
> test-summariseCharacteristics.R: i summarising cohort cohort_2
> test-summariseCharacteristics.R: v summariseCharacteristics finished!
[ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3',
'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3',
'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3',
'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3',
'test-plotLargeScaleCharacteristics.R:3:3',
'test-summariseCohortCount.R:2:3',
'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3',
'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3',
'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3',
'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3',
'test-tableLargeScaleCharacteristics.R:2:3',
'test-tableLargeScaleCharacteristics.R:80:3',
'test-summariseCharacteristics.R:1180:3',
'test-summariseCharacteristics.R:1425:3',
'test-summariseCharacteristics.R:1552:3'
• empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1',
'test-summariseCohortTiming.R:114:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotCohortTiming.R:245:3'): plotCohortTiming, density x axis ───
Error in `dplyr::collect(x)`: Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER)
Stack Trace:
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed]
/data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic.
For more information, see https://duckdb.org/docs/stable/dev/internal_errors
i Context: rapi_prepare
i Error type: INTERNAL
── Error ('test-summariseCohortTiming.R:60:3'): summariseCohortTiming ──────────
Error in `dplyr::collect(x)`: Failed to collect lazy table.
Caused by error in `dbSendQuery()`:
! INTERNAL Error: Failed to bind column reference "cohort_start_date_comparator" [24.0]: inequal types (DATE != INTEGER)
Stack Trace:
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::ToJSON(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x66) [0x7f10caa1d486]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Exception::Exception(duckdb::ExceptionType, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x23) [0x7f10caa1d4e3]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x15) [0x7f10caa209c5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::InternalException::InternalException<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long&, unsigned long&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)+0x1ba) [0x7f10cad7189a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x347081) [0x7f10c9d47081]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitExpression(duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)+0x136) [0x7f10cb6e4636]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::EnumerateExpressions(duckdb::LogicalOperator&, std::function<void (duckdb::unique_ptr<duckdb::Expression, std::default_delete<duckdb::Expression>, true>*)> const&)+0x95) [0x7f10cb6e67a5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorExpressions(duckdb::LogicalOperator&)+0x51) [0x7f10cb6e6d71]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x96) [0x7f10cad5de96]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x33a) [0x7f10cad5e13a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::LogicalOperatorVisitor::VisitOperatorChildren(duckdb::LogicalOperator&)+0x5d) [0x7f10cb6f8a6d]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ColumnBindingResolver::VisitOperator(duckdb::LogicalOperator&)+0x8b) [0x7f10cad5de8b]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::ResolveAndPlan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x9d) [0x7f10cad5e8bd]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::PhysicalPlanGenerator::Plan(duckdb::unique_ptr<duckdb::LogicalOperator, std::default_delete<duckdb::LogicalOperator>, true>)+0x39) [0x7f10cad5eab9]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatementInternal(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters)+0x695) [0x7f10cb4b58a5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::CreatePreparedStatement(duckdb::ClientContextLock&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>, duckdb::PendingQueryParameters, duckdb::PreparedStatementMode)+0x4ea) [0x7f10cb4b60ba]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(+0x1ab67a8) [0x7f10cb4b67a8]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::RunFunctionInTransactionInternal(duckdb::ClientContextLock&, std::function<void ()> const&, bool)+0x8d) [0x7f10cb48eddd]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::PrepareInternal(duckdb::ClientContextLock&, duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x1c5) [0x7f10cb493bf5]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::ClientContext::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0xba) [0x7f10cb4b8b0a]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(duckdb::Connection::Prepare(duckdb::unique_ptr<duckdb::SQLStatement, std::default_delete<duckdb::SQLStatement>, true>)+0x47) [0x7f10cb4b8be7]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(rapi_prepare(cpp11::external_pointer<duckdb::ConnWrapper, &duckdb::ConnDeleter>, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, cpp11::environment)+0x455) [0x7f10ca081e45]
/data/gannet/ripley/R/test-dev/duckdb/libs/duckdb.so(_duckdb_rapi_prepare+0x1c7) [0x7f10ca106d17]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a344e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e8fa5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x337) [0x4d90b7]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d97a5]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e5a34]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f0c41]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/test-dev/rlang/libs/rlang.so(+0x194e8) [0x7f10da4994e8]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4a172d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed7b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R(R_execMethod+0x23d) [0x4dc2ed]
/data/gannet/ripley/R/R-devel/library/methods/libs/methods.so(+0x3946) [0x7f10dce6a946]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x547bfd]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4f22cb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544562]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x54360e]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x543f95]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x5446a3]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x544962]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed55c]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dedc5]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4db175]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x534) [0x4d92b4]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e158f]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d7cae]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d8a0d]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x261) [0x4d8fe1]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e1898]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ed6ba]
/data/gannet/ripley/R/R-devel/bin/exec/R() [0x4dfdbb]
/data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x17b) [0x4d8efb]
This error signals an assertion failure within DuckDB. This usually occurs due to unexpected conditions or errors in the program's logic.
For more information, see https://duckdb.org/docs/stable/dev/internal_errors
i Context: rapi_prepare
i Error type: INTERNAL
[ FAIL 2 | WARN 17 | SKIP 24 | PASS 218 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 3.6Mb
help 1.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.1
Check: for code/documentation mismatches
Result: WARN
Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd':
mockCohortCharacteristics
Code: function(con = NULL, writeSchema = NULL, numberIndividuals =
10, ..., seed = NULL)
Docs: function(numberIndividuals = 10, ..., source = "local", con =
lifecycle::deprecated(), writeSchema =
lifecycle::deprecated(), seed =
lifecycle::deprecated())
Argument names in docs not in code:
source
Mismatches in argument names (first 3):
Position: 1 Code: con Docs: numberIndividuals
Position: 2 Code: writeSchema Docs: ...
Position: 3 Code: numberIndividuals Docs: source
Mismatches in argument default values:
Name: 'con' Code: NULL Docs: lifecycle::deprecated()
Name: 'writeSchema' Code: NULL Docs: lifecycle::deprecated()
Name: 'seed' Code: NULL Docs: lifecycle::deprecated()
Flavor: r-oldrel-macos-x86_64