Last updated on 2025-02-05 02:48:55 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.6 | 20.23 | 328.79 | 349.02 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.6 | 13.82 | 266.35 | 280.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.6 | 542.38 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.6 | 541.33 | OK | |||
| r-devel-windows-x86_64 | 2.1.6 | 20.00 | 575.00 | 595.00 | OK | |
| r-patched-linux-x86_64 | 2.1.6 | 19.32 | 308.70 | 328.02 | OK | |
| r-release-linux-x86_64 | 2.1.6 | 17.09 | 308.88 | 325.97 | OK | |
| r-release-macos-arm64 | 2.1.6 | 93.00 | ERROR | |||
| r-release-macos-x86_64 | 2.1.6 | 211.00 | ERROR | |||
| r-release-windows-x86_64 | 2.1.6 | 20.00 | 571.00 | 591.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.6 | 93.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.1.6 | 188.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.1.6 | 26.00 | 654.00 | 680.00 | NOTE |
Version: 2.1.6
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19',
'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.6
Check: examples
Result: ERROR
Running examples in ‘MicroSEC-Ex.R’ failed
The error most likely occurred in:
> ### Name: fun_load_genome
> ### Title: Genome loading function.
> ### Aliases: fun_load_genome
>
> ### ** Examples
>
> fun_load_genome("Human")
Error: Install BSgenome.Hsapiens.UCSC.hg38 package.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Quitting from lines 125-195 [analysis] (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 2.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
Quitting from lines 125-195 [analysis] (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 2.1.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'BSgenome.Mmusculus.UCSC.mm10'
Flavor: r-oldrel-windows-x86_64