Last updated on 2025-09-30 01:48:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.14.3 | 60.35 | 760.96 | 821.31 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.14.3 | 43.94 | 521.61 | 565.55 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.14.3 | 1297.32 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.14.3 | 1251.34 | ERROR | |||
| r-devel-windows-x86_64 | 0.14.3 | 61.00 | 717.00 | 778.00 | ERROR | |
| r-patched-linux-x86_64 | 0.14.3 | 56.46 | 717.85 | 774.31 | ERROR | |
| r-release-linux-x86_64 | 0.14.3 | 56.09 | 708.41 | 764.50 | ERROR | |
| r-release-macos-arm64 | 0.14.3 | 261.00 | OK | |||
| r-release-macos-x86_64 | 0.14.3 | 434.00 | OK | |||
| r-release-windows-x86_64 | 0.14.3 | 63.00 | 714.00 | 777.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.14.3 | 295.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.14.3 | 463.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.14.3 | 85.00 | 963.00 | 1048.00 | ERROR |
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [119s/79s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:11:3',
'test_figures_misc.R:19:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:209:3',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_figures_beta_div.R:402:3',
'test_figures_beta_div.R:414:3', 'test_krona.R:7:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_figures_taxo.R:414:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3',
'test_phyloseq_class.R:95:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_rw.R:39:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:6:3', 'test_table_functions.R:19:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:84:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [80s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_alpha_div.R:17:3',
'test_figures_alpha_div.R:63:3', 'test_figures_alpha_div.R:73:3',
'test_figures_alpha_div.R:95:3', 'test_figures_alpha_div.R:122:3',
'test_figures_alpha_div.R:151:3', 'test_figures_alpha_div.R:157:3',
'test_figures_biplot.R:14:3', 'test_figures_biplot.R:52:3',
'test_figures_misc.R:11:3', 'test_figures_misc.R:19:3',
'test_figures_misc.R:26:3', 'test_figures_misc.R:35:3',
'test_figures_summary_plot.R:9:3', 'test_figures_summary_plot.R:19:3',
'test_figures_summary_plot.R:28:3', 'test_figures_taxo.R:64:3',
'test_figures_taxo.R:165:3', 'test_figures_taxo.R:209:5',
'test_figures_taxo.R:252:5', 'test_figures_taxo.R:319:5',
'test_figures_taxo.R:354:3', 'test_figures_taxo.R:379:3',
'test_figures_taxo.R:414:3', 'test_krona.R:7:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:209:3',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_figures_beta_div.R:402:3',
'test_figures_beta_div.R:414:3', 'test_phyloseq_class.R:10:3',
'test_phyloseq_class.R:51:3', 'test_phyloseq_class.R:95:3', 'test_rw.R:8:3',
'test_rw.R:24:3', 'test_rw.R:39:3', 'test_subset.R:7:3',
'test_subset.R:18:3', 'test_table_functions.R:6:3',
'test_table_functions.R:19:3', 'test_table_functions.R:34:5',
'test_table_functions.R:47:5', 'test_misc.R:11:3', 'test_misc.R:30:3',
'test_misc.R:97:3', 'test_tuckey.R:5:3', 'test_tuckey.R:17:3',
'test_tuckey.R:26:3', 'test_targets.R:5:3', 'test_targets.R:56:3',
'test_targets.R:84:3', 'test_targets.R:101:3', 'test_targets.R:111:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [192s/142s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:11:3',
'test_figures_misc.R:19:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:209:3',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_figures_beta_div.R:402:3',
'test_figures_beta_div.R:414:3', 'test_figures_taxo.R:64:3',
'test_figures_taxo.R:165:3', 'test_figures_taxo.R:209:5',
'test_figures_taxo.R:252:5', 'test_figures_taxo.R:319:5',
'test_figures_taxo.R:354:3', 'test_figures_taxo.R:379:3',
'test_figures_taxo.R:414:3', 'test_krona.R:7:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3',
'test_phyloseq_class.R:95:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_rw.R:39:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:6:3', 'test_table_functions.R:19:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:84:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [192s/146s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_beta_div.R:22:3',
'test_figures_beta_div.R:73:5', 'test_figures_beta_div.R:92:3',
'test_figures_beta_div.R:102:5', 'test_figures_beta_div.R:159:5',
'test_figures_beta_div.R:209:3', 'test_figures_beta_div.R:241:5',
'test_figures_beta_div.R:259:5', 'test_figures_beta_div.R:289:5',
'test_figures_beta_div.R:314:3', 'test_figures_beta_div.R:346:3',
'test_figures_beta_div.R:355:3', 'test_figures_beta_div.R:387:3',
'test_figures_beta_div.R:402:3', 'test_figures_beta_div.R:414:3',
'test_figures_misc.R:11:3', 'test_figures_misc.R:19:3',
'test_figures_misc.R:26:3', 'test_figures_misc.R:35:3',
'test_figures_summary_plot.R:9:3', 'test_figures_summary_plot.R:19:3',
'test_figures_summary_plot.R:28:3', 'test_krona.R:7:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_figures_taxo.R:414:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3',
'test_phyloseq_class.R:95:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_rw.R:39:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:6:3', 'test_table_functions.R:19:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:84:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.14.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [59s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
══ Skipped tests (75) ══════════════════════════════════════════════════════════
• On CRAN (63): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_figures_beta_div.R:22:3',
'test_figures_beta_div.R:73:5', 'test_figures_beta_div.R:92:3',
'test_figures_beta_div.R:102:5', 'test_figures_beta_div.R:159:5',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_krona.R:7:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3', 'test_rw.R:8:3',
'test_rw.R:24:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:101:3',
'test_targets.R:111:3', 'test_tuckey.R:5:3', 'test_tuckey.R:17:3',
'test_tuckey.R:26:3', 'test_misc.R:11:3', 'test_misc.R:30:3',
'test_misc.R:97:3'
• On Windows (12): 'test_figures_misc.R:10:3', 'test_figures_misc.R:18:3',
'test_figures_taxo.R:413:3', 'test_figures_beta_div.R:208:3',
'test_figures_beta_div.R:401:3', 'test_figures_beta_div.R:413:3',
'test_phyloseq_class.R:93:3', 'test_rw.R:38:3', 'test_table_functions.R:5:3',
'test_table_functions.R:18:3', 'test_targets.R:83:3', 'test_targets.R:128:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [112s/69s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:11:3',
'test_figures_misc.R:19:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:209:3',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_figures_beta_div.R:402:3',
'test_figures_beta_div.R:414:3', 'test_krona.R:7:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_figures_taxo.R:414:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3',
'test_phyloseq_class.R:95:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_rw.R:39:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:6:3', 'test_table_functions.R:19:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:84:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.14.3
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [109s/70s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
══ Skipped tests (74) ══════════════════════════════════════════════════════════
• On CRAN (74): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:11:3',
'test_figures_misc.R:19:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:209:3',
'test_figures_beta_div.R:241:5', 'test_figures_beta_div.R:259:5',
'test_figures_beta_div.R:289:5', 'test_figures_beta_div.R:314:3',
'test_figures_beta_div.R:346:3', 'test_figures_beta_div.R:355:3',
'test_figures_beta_div.R:387:3', 'test_figures_beta_div.R:402:3',
'test_figures_beta_div.R:414:3', 'test_krona.R:7:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_figures_taxo.R:414:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3',
'test_phyloseq_class.R:95:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_rw.R:39:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:6:3', 'test_table_functions.R:19:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:84:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 74 | PASS 82 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.14.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [61s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
══ Skipped tests (75) ══════════════════════════════════════════════════════════
• On CRAN (63): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:241:5',
'test_figures_beta_div.R:259:5', 'test_figures_beta_div.R:289:5',
'test_figures_beta_div.R:314:3', 'test_figures_beta_div.R:346:3',
'test_figures_beta_div.R:355:3', 'test_figures_beta_div.R:387:3',
'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_krona.R:7:3',
'test_phyloseq_class.R:10:3', 'test_phyloseq_class.R:51:3', 'test_rw.R:8:3',
'test_rw.R:24:3', 'test_subset.R:7:3', 'test_subset.R:18:3',
'test_table_functions.R:34:5', 'test_table_functions.R:47:5',
'test_targets.R:5:3', 'test_targets.R:56:3', 'test_targets.R:101:3',
'test_targets.R:111:3', 'test_tuckey.R:5:3', 'test_tuckey.R:17:3',
'test_tuckey.R:26:3', 'test_misc.R:11:3', 'test_misc.R:30:3',
'test_misc.R:97:3'
• On Windows (12): 'test_figures_misc.R:10:3', 'test_figures_misc.R:18:3',
'test_figures_beta_div.R:208:3', 'test_figures_beta_div.R:401:3',
'test_figures_beta_div.R:413:3', 'test_figures_taxo.R:413:3',
'test_phyloseq_class.R:93:3', 'test_rw.R:38:3', 'test_table_functions.R:5:3',
'test_table_functions.R:18:3', 'test_targets.R:83:3', 'test_targets.R:128:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.14.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'ANCOMBC', 'mia'
Flavor: r-oldrel-macos-x86_64
Version: 0.14.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘ANCOMBC’
Flavor: r-oldrel-macos-x86_64
Version: 0.14.3
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [84s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: purrr
Attaching package: 'purrr'
The following object is masked from 'package:testthat':
is_null
>
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
══ Skipped tests (75) ══════════════════════════════════════════════════════════
• On CRAN (63): 'test_adonis.R:1:1', 'test_controls.R:7:3',
'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',
'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',
'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',
'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',
'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',
'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',
'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',
'test_figures_biplot.R:52:3', 'test_figures_misc.R:26:3',
'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',
'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',
'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:241:5',
'test_figures_beta_div.R:259:5', 'test_figures_beta_div.R:289:5',
'test_figures_beta_div.R:314:3', 'test_figures_beta_div.R:346:3',
'test_figures_beta_div.R:355:3', 'test_figures_beta_div.R:387:3',
'test_krona.R:7:3', 'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',
'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',
'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',
'test_figures_taxo.R:379:3', 'test_phyloseq_class.R:10:3',
'test_phyloseq_class.R:51:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
'test_subset.R:7:3', 'test_subset.R:18:3', 'test_table_functions.R:34:5',
'test_table_functions.R:47:5', 'test_targets.R:5:3', 'test_targets.R:56:3',
'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',
'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',
'test_misc.R:30:3', 'test_misc.R:97:3'
• On Windows (12): 'test_figures_misc.R:10:3', 'test_figures_misc.R:18:3',
'test_figures_beta_div.R:208:3', 'test_figures_beta_div.R:401:3',
'test_figures_beta_div.R:413:3', 'test_figures_taxo.R:413:3',
'test_phyloseq_class.R:93:3', 'test_rw.R:38:3', 'test_table_functions.R:5:3',
'test_table_functions.R:18:3', 'test_targets.R:83:3', 'test_targets.R:128:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────
`graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.
[ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64