Last updated on 2024-07-27 01:53:35 CEST.
Package | ERROR | OK |
---|---|---|
CDMConnector | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.5.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a05_cdm_reference_backends.Rmd’
...
> cdm$condition_occurrence <- cdm$condition_occurrence %>%
+ filter(condition_concept_id == "4035415") %>% select(person_id,
+ condition_sta .... [TRUNCATED]
When sourcing ‘a05_cdm_reference_backends.R’:
Error: condition_occurrence_id, condition_concept_id and
condition_type_concept_id are not present in table condition_occurrence
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘a01_getting-started.Rmd’ using ‘UTF-8’... [5s/6s] OK
‘a02_cohorts.Rmd’ using ‘UTF-8’... [13s/12s] OK
‘a03_dbplyr.Rmd’ using ‘UTF-8’... [3s/3s] OK
‘a04_DBI_connection_examples.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a05_cdm_reference_backends.Rmd’ using ‘UTF-8’... failed
‘a06_using_cdm_attributes.Rmd’ using ‘UTF-8’... [3s/3s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.5.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘a05_cdm_reference_backends.Rmd’
...
> cdm$condition_occurrence <- cdm$condition_occurrence %>%
+ filter(condition_concept_id == "4035415") %>% select(person_id,
+ condition_sta .... [TRUNCATED]
When sourcing ‘a05_cdm_reference_backends.R’:
Error: condition_occurrence_id, condition_concept_id and
condition_type_concept_id are not present in table condition_occurrence
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘a01_getting-started.Rmd’ using ‘UTF-8’... [9s/15s] OK
‘a02_cohorts.Rmd’ using ‘UTF-8’... [22s/34s] OK
‘a03_dbplyr.Rmd’ using ‘UTF-8’... [4s/6s] OK
‘a04_DBI_connection_examples.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘a05_cdm_reference_backends.Rmd’ using ‘UTF-8’... failed
‘a06_using_cdm_attributes.Rmd’ using ‘UTF-8’... [5s/6s] OK
Flavor: r-oldrel-macos-x86_64