Last updated on 2026-07-25 01:50:45 CEST.
| Package | OK | NOTE | ERROR | Other |
|---|---|---|---|---|
| adjoin | 13 | |||
| albersdown | 13 | |||
| bidser | 13 | |||
| colorplane | 13 | |||
| deflist | 13 | |||
| delarr | 13 | |||
| eigencore | 5 | 3 | ||
| fmriAR | 13 | |||
| fmrihrf | 13 | |||
| multivarious | 11 | 2 | ||
| neuroim | 9 | 4 | ||
| neuroim2 | 11 | 2 | ||
| shard | 13 | 1 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 5, ERROR: 3
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eigencore)
>
> test_check("eigencore")
Saving _problems/test-bench-smoke-41.R
Saving _problems/test-bench-smoke-187.R
Saving _problems/test-bench-smoke-231.R
Saving _problems/test-bench-smoke-272.R
Saving _problems/test-bench-smoke-1038.R
Saving _problems/test-bench-smoke-1190.R
Saving _problems/test-bench-smoke-1235.R
Saving _problems/test-bench-smoke-1338.R
Saving _problems/test-bench-smoke-1373.R
Saving _problems/test-bench-smoke-1411.R
Saving _problems/test-bench-smoke-1535.R
Saving _problems/test-bench-smoke-1691.R
Saving _problems/test-bench-smoke-1768.R
Saving _problems/test-bench-smoke-1769.R
Saving _problems/test-bench-smoke-1770.R
Saving _problems/test-bench-smoke-1861.R
Saving _problems/test-bench-smoke-1862.R
Saving _problems/test-bench-smoke-1863.R
Saving _problems/test-bench-smoke-1959.R
Saving _problems/test-bench-smoke-1960.R
Saving _problems/test-bench-smoke-1961.R
Saving _problems/test-bench-smoke-1962.R
Saving _problems/test-validation-458.R
[ FAIL 23 | WARN 0 | SKIP 20 | PASS 3918 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• GitHub workflow is source-only and excluded from the built package (1):
'test-bench-smoke.R:594:3'
• On CRAN (8): 'test-api-surface.R:18:1', 'test-api-surface.R:30:1',
'test-api-surface.R:36:1', 'test-property-hermitian.R:2:3',
'test-property-hermitian.R:31:3', 'test-property-svd.R:2:3',
'test-property-svd.R:33:3', 'test-sparse-general-pencil.R:171:3'
• repository docs/generalized-eigen-api.md is excluded from package tarballs
(1): 'test-generalized-api-contract.R:17:3'
• source docs are not available in installed-package checks (8):
'test-bench-smoke.R:748:3', 'test-bench-smoke.R:772:3',
'test-bench-smoke.R:825:3', 'test-bench-smoke.R:845:3',
'test-bench-smoke.R:879:3', 'test-bench-smoke.R:899:3',
'test-bench-smoke.R:914:3', 'test-bench-smoke.R:928:3'
• {PRIMME} is not installed (1): 'test-bench-smoke.R:203:3'
• {geigen} is not installed (1): 'test-generalized-svd.R:96:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bench-smoke.R:35:3'): benchmark harness produces certificate-inclusive rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:35:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:181:3'): Gram SVD cutoff benchmark rows expose 600-side provenance ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:231:3'): benchmark timing resets seed for each measured iteration ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global run_timed(stats::runif(1), iterations = 3, seed = 410) at test-bench-smoke.R:231:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:264:3'): generalized LOBPCG benchmark exposes native B-orthogonal diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_generalized_eigen_case(...) at test-bench-smoke.R:264:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global run_timed(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1032:3'): randomized-rsvd benchmark rows expose native projection diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_randomized_rsvd_case(...) at test-bench-smoke.R:1032:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1181:3'): SVD benchmark exposes guarded BPRO diagnostic rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1229:3'): SVD benchmark harness exposes Golub-Kahan candidate separately ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1229:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1332:3'): SVD benchmark can expose projected Golub-Kahan as a separate row ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1332:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1367:3'): SVD benchmark can expose native block Golub-Kahan cycle candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1367:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1397:3'): SVD benchmark can expose lean native block Golub-Kahan restart candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1397:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1528:3'): SVD benchmark rows audit raw and eigencore-certified reference timing ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1528:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1686:3'): tiny Gram eigensolver benchmark compares native backends ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_tiny_gram_eigensolvers(...) at test-bench-smoke.R:1686:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Failure ('test-bench-smoke.R:1768:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `any(rows$certificate_type == "method_error")` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Failure ('test-bench-smoke.R:1769:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$certificate_passed)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1770:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$nconv >= rows$k)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1861:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_kind` to equal "shifted_tridiagonal".
Differences:
`actual`: NA
`expected`: "shifted_tridiagonal"
── Failure ('test-bench-smoke.R:1862:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_native` to be TRUE.
Differences:
`actual`: <NA>
`expected`: TRUE
── Failure ('test-bench-smoke.R:1863:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_calls` >= 1L.
Actual comparison: NA < 1
── Failure ('test-bench-smoke.R:1959:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$block_size` to equal 2L.
Differences:
`actual`: NA
`expected`: 2
── Failure ('test-bench-smoke.R:1960:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$restarts` >= 0L.
Actual comparison: NA < 0
── Failure ('test-bench-smoke.R:1961:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `is.finite(block_row$stage_reorthogonalization_seconds)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1962:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$stage_reorthogonalization_seconds` > 0.
Actual comparison: NA <= 0.0
── Error ('test-validation.R:458:3'): benchmark helpers return timing rows for base and eigencore ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─eigencore:::benchmark_eigen_methods(...) at test-validation.R:458:3
2. └─base::lapply(...)
3. └─eigencore (local) FUN(X[[i]], ...)
4. └─eigencore:::time_repeated(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
[ FAIL 23 | WARN 0 | SKIP 20 | PASS 3918 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [37s/38s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eigencore)
>
> test_check("eigencore")
Saving _problems/test-bench-smoke-41.R
Saving _problems/test-bench-smoke-187.R
Saving _problems/test-bench-smoke-231.R
Saving _problems/test-bench-smoke-272.R
Saving _problems/test-bench-smoke-1038.R
Saving _problems/test-bench-smoke-1190.R
Saving _problems/test-bench-smoke-1235.R
Saving _problems/test-bench-smoke-1338.R
Saving _problems/test-bench-smoke-1373.R
Saving _problems/test-bench-smoke-1411.R
Saving _problems/test-bench-smoke-1535.R
Saving _problems/test-bench-smoke-1691.R
Saving _problems/test-bench-smoke-1768.R
Saving _problems/test-bench-smoke-1769.R
Saving _problems/test-bench-smoke-1770.R
Saving _problems/test-bench-smoke-1861.R
Saving _problems/test-bench-smoke-1862.R
Saving _problems/test-bench-smoke-1863.R
Saving _problems/test-bench-smoke-1959.R
Saving _problems/test-bench-smoke-1960.R
Saving _problems/test-bench-smoke-1961.R
Saving _problems/test-bench-smoke-1962.R
Saving _problems/test-validation-458.R
[ FAIL 23 | WARN 0 | SKIP 20 | PASS 3918 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
• GitHub workflow is source-only and excluded from the built package (1):
'test-bench-smoke.R:594:3'
• On CRAN (8): 'test-api-surface.R:18:1', 'test-api-surface.R:30:1',
'test-api-surface.R:36:1', 'test-property-hermitian.R:2:3',
'test-property-hermitian.R:31:3', 'test-property-svd.R:2:3',
'test-property-svd.R:33:3', 'test-sparse-general-pencil.R:171:3'
• repository docs/generalized-eigen-api.md is excluded from package tarballs
(1): 'test-generalized-api-contract.R:17:3'
• source docs are not available in installed-package checks (8):
'test-bench-smoke.R:748:3', 'test-bench-smoke.R:772:3',
'test-bench-smoke.R:825:3', 'test-bench-smoke.R:845:3',
'test-bench-smoke.R:879:3', 'test-bench-smoke.R:899:3',
'test-bench-smoke.R:914:3', 'test-bench-smoke.R:928:3'
• {PRIMME} is not installed (1): 'test-bench-smoke.R:203:3'
• {geigen} is not installed (1): 'test-generalized-svd.R:96:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bench-smoke.R:35:3'): benchmark harness produces certificate-inclusive rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:35:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:181:3'): Gram SVD cutoff benchmark rows expose 600-side provenance ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:231:3'): benchmark timing resets seed for each measured iteration ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global run_timed(stats::runif(1), iterations = 3, seed = 410) at test-bench-smoke.R:231:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:264:3'): generalized LOBPCG benchmark exposes native B-orthogonal diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_generalized_eigen_case(...) at test-bench-smoke.R:264:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global run_timed(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1032:3'): randomized-rsvd benchmark rows expose native projection diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_randomized_rsvd_case(...) at test-bench-smoke.R:1032:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1181:3'): SVD benchmark exposes guarded BPRO diagnostic rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1229:3'): SVD benchmark harness exposes Golub-Kahan candidate separately ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1229:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1332:3'): SVD benchmark can expose projected Golub-Kahan as a separate row ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1332:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1367:3'): SVD benchmark can expose native block Golub-Kahan cycle candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1367:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1397:3'): SVD benchmark can expose lean native block Golub-Kahan restart candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1397:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1528:3'): SVD benchmark rows audit raw and eigencore-certified reference timing ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1528:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1686:3'): tiny Gram eigensolver benchmark compares native backends ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_tiny_gram_eigensolvers(...) at test-bench-smoke.R:1686:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Failure ('test-bench-smoke.R:1768:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `any(rows$certificate_type == "method_error")` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Failure ('test-bench-smoke.R:1769:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$certificate_passed)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1770:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$nconv >= rows$k)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1861:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_kind` to equal "shifted_tridiagonal".
Differences:
`actual`: NA
`expected`: "shifted_tridiagonal"
── Failure ('test-bench-smoke.R:1862:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_native` to be TRUE.
Differences:
`actual`: <NA>
`expected`: TRUE
── Failure ('test-bench-smoke.R:1863:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_calls` >= 1L.
Actual comparison: NA < 1
── Failure ('test-bench-smoke.R:1959:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$block_size` to equal 2L.
Differences:
`actual`: NA
`expected`: 2
── Failure ('test-bench-smoke.R:1960:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$restarts` >= 0L.
Actual comparison: NA < 0
── Failure ('test-bench-smoke.R:1961:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `is.finite(block_row$stage_reorthogonalization_seconds)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1962:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$stage_reorthogonalization_seconds` > 0.
Actual comparison: NA <= 0.0
── Error ('test-validation.R:458:3'): benchmark helpers return timing rows for base and eigencore ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─eigencore:::benchmark_eigen_methods(...) at test-validation.R:458:3
2. └─base::lapply(...)
3. └─eigencore (local) FUN(X[[i]], ...)
4. └─eigencore:::time_repeated(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
[ FAIL 23 | WARN 0 | SKIP 20 | PASS 3918 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [29s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eigencore)
>
> test_check("eigencore")
Saving _problems/test-bench-smoke-41.R
Saving _problems/test-bench-smoke-187.R
Saving _problems/test-bench-smoke-231.R
Saving _problems/test-bench-smoke-272.R
Saving _problems/test-bench-smoke-1038.R
Saving _problems/test-bench-smoke-1190.R
Saving _problems/test-bench-smoke-1235.R
Saving _problems/test-bench-smoke-1338.R
Saving _problems/test-bench-smoke-1373.R
Saving _problems/test-bench-smoke-1411.R
Saving _problems/test-bench-smoke-1535.R
Saving _problems/test-bench-smoke-1691.R
Saving _problems/test-bench-smoke-1768.R
Saving _problems/test-bench-smoke-1769.R
Saving _problems/test-bench-smoke-1770.R
Saving _problems/test-bench-smoke-1861.R
Saving _problems/test-bench-smoke-1862.R
Saving _problems/test-bench-smoke-1863.R
Saving _problems/test-bench-smoke-1959.R
Saving _problems/test-bench-smoke-1960.R
Saving _problems/test-bench-smoke-1961.R
Saving _problems/test-bench-smoke-1962.R
Saving _problems/test-validation-458.R
[ FAIL 23 | WARN 0 | SKIP 19 | PASS 3922 ]
══ Skipped tests (19) ══════════════════════════════════════════════════════════
• GitHub workflow is source-only and excluded from the built package (1):
'test-bench-smoke.R:594:3'
• On CRAN (8): 'test-api-surface.R:18:1', 'test-api-surface.R:30:1',
'test-api-surface.R:36:1', 'test-property-hermitian.R:2:3',
'test-property-hermitian.R:31:3', 'test-property-svd.R:2:3',
'test-property-svd.R:33:3', 'test-sparse-general-pencil.R:171:3'
• repository docs/generalized-eigen-api.md is excluded from package tarballs
(1): 'test-generalized-api-contract.R:17:3'
• source docs are not available in installed-package checks (8):
'test-bench-smoke.R:748:3', 'test-bench-smoke.R:772:3',
'test-bench-smoke.R:825:3', 'test-bench-smoke.R:845:3',
'test-bench-smoke.R:879:3', 'test-bench-smoke.R:899:3',
'test-bench-smoke.R:914:3', 'test-bench-smoke.R:928:3'
• {PRIMME} is not installed (1): 'test-bench-smoke.R:203:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bench-smoke.R:35:3'): benchmark harness produces certificate-inclusive rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:35:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:181:3'): Gram SVD cutoff benchmark rows expose 600-side provenance ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:231:3'): benchmark timing resets seed for each measured iteration ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global run_timed(stats::runif(1), iterations = 3, seed = 410) at test-bench-smoke.R:231:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:264:3'): generalized LOBPCG benchmark exposes native B-orthogonal diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_generalized_eigen_case(...) at test-bench-smoke.R:264:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global run_timed(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1032:3'): randomized-rsvd benchmark rows expose native projection diagnostics ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_randomized_rsvd_case(...) at test-bench-smoke.R:1032:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1181:3'): SVD benchmark exposes guarded BPRO diagnostic rows ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1181:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1229:3'): SVD benchmark harness exposes Golub-Kahan candidate separately ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1229:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1332:3'): SVD benchmark can expose projected Golub-Kahan as a separate row ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1332:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1367:3'): SVD benchmark can expose native block Golub-Kahan cycle candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1367:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1397:3'): SVD benchmark can expose lean native block Golub-Kahan restart candidate ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1397:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1528:3'): SVD benchmark rows audit raw and eigencore-certified reference timing ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_svd_case(...) at test-bench-smoke.R:1528:3
2. └─base::lapply(...)
3. └─FUN(X[[i]], ...)
4. └─global time_certified_svd_method(method, A, rank, tol, seed, iterations)
5. └─global run_timed(...)
6. └─bench::mark(...)
7. └─bench (local) eval_one(exprs[[i]], memory)
8. └─utils::Rprofmem(f, threshold = 1)
── Error ('test-bench-smoke.R:1686:3'): tiny Gram eigensolver benchmark compares native backends ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─global benchmark_tiny_gram_eigensolvers(...) at test-bench-smoke.R:1686:3
2. └─bench::mark(...)
3. └─bench (local) eval_one(exprs[[i]], memory)
4. └─utils::Rprofmem(f, threshold = 1)
── Failure ('test-bench-smoke.R:1768:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `any(rows$certificate_type == "method_error")` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
── Failure ('test-bench-smoke.R:1769:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$certificate_passed)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1770:3'): G1 candidate baseline covers required pre-promotion cases ──
Expected `all(rows$nconv >= rows$k)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1861:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_kind` to equal "shifted_tridiagonal".
Differences:
`actual`: NA
`expected`: "shifted_tridiagonal"
── Failure ('test-bench-smoke.R:1862:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_native` to be TRUE.
Differences:
`actual`: <NA>
`expected`: TRUE
── Failure ('test-bench-smoke.R:1863:3'): benchmark rows expose typed preconditioner diagnostics ──
Expected `rows$preconditioner_calls` >= 1L.
Actual comparison: NA < 1
── Failure ('test-bench-smoke.R:1959:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$block_size` to equal 2L.
Differences:
`actual`: NA
`expected`: 2
── Failure ('test-bench-smoke.R:1960:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$restarts` >= 0L.
Actual comparison: NA < 0
── Failure ('test-bench-smoke.R:1961:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `is.finite(block_row$stage_reorthogonalization_seconds)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-bench-smoke.R:1962:3'): Hermitian benchmark harness can gate the explicit block candidate ──
Expected `block_row$stage_reorthogonalization_seconds` > 0.
Actual comparison: NA <= 0.0
── Error ('test-validation.R:458:3'): benchmark helpers return timing rows for base and eigencore ──
Error in `utils::Rprofmem(f, threshold = 1)`: memory profiling is not available on this system
Backtrace:
▆
1. └─eigencore:::benchmark_eigen_methods(...) at test-validation.R:458:3
2. └─base::lapply(...)
3. └─eigencore (local) FUN(X[[i]], ...)
4. └─eigencore:::time_repeated(...)
5. └─bench::mark(...)
6. └─bench (local) eval_one(exprs[[i]], memory)
7. └─utils::Rprofmem(f, threshold = 1)
[ FAIL 23 | WARN 0 | SKIP 19 | PASS 3922 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 11, NOTE: 2
Version: 0.3.2
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘perm_test.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 9, NOTE: 4
Version: 0.0.6
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Bradley Buchsbaum <brad.buchsbaum@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Bradley", "R."),
family = "Buchsbaum",
role = "aut"),
person(given = "Bradley",
family = "Buchsbaum",
role = "cre",
email = "brad.buchsbaum@gmail.com"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.0.6
Check: compiled code
Result: NOTE
File ‘neuroim/libs/neuroim.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 11, NOTE: 2
Version: 0.13.0
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘as-ClusteredNeuroVol-DenseNeuroVol.Rd’ ‘as.raster.Rd’ ‘image.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13, Other: 1