Last updated on 2026-02-18 01:53:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 17.62 | 479.63 | 497.25 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 12.25 | 293.60 | 305.85 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 29.00 | 729.10 | 758.10 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 27.00 | 718.47 | 745.47 | OK | |
| r-devel-macos-arm64 | 1.0.5 | 4.00 | 103.00 | 107.00 | OK | |
| r-devel-windows-x86_64 | 1.0.5 | 20.00 | 407.00 | 427.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 18.05 | 445.62 | 463.67 | OK | |
| r-release-linux-x86_64 | 1.0.5 | 14.67 | 442.70 | 457.37 | OK | |
| r-release-macos-arm64 | 1.0.5 | 4.00 | 94.00 | 98.00 | OK | |
| r-release-macos-x86_64 | 1.0.5 | 11.00 | 316.00 | 327.00 | OK | |
| r-release-windows-x86_64 | 1.0.5 | 19.00 | 400.00 | 419.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.5 | 4.00 | 97.00 | 101.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.5 | 12.00 | 351.00 | 363.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.5 | 25.00 | 556.00 | 581.00 | OK |
Version: 1.0.5
Check: examples
Result: ERROR
Running examples in ‘csmpv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: LASSO2plus
> ### Title: Variable Selection and Modeling with LASSO2plus
> ### Aliases: LASSO2plus
>
> ### ** Examples
>
> # Load in data sets:
> data("datlist", package = "csmpv")
> tdat = datlist$training
>
> # The function saves files locally. You can define your own temporary directory.
> # If not, tempdir() can be used to get the system's temporary directory.
> temp_dir = tempdir()
> # As an example, let's define Xvars, which will be used later:
> Xvars = c("highIPI", "B.Symptoms", "MYC.IHC", "BCL2.IHC", "CD10.IHC", "BCL6.IHC")
> # The function can work with three different outcome types.
> # Here, we use continuous as an example:
> c2fit = LASSO2plus(data = tdat, biomks = Xvars,
+ outcomeType = "continuous", Y = "Age",
+ outfile = paste0(temp_dir, "/continuousLASSO2plus"))
Start: AIC=1747.09
Age ~ highIPI + BCL2.IHC
Df Deviance AIC
- BCL2.IHC 1 39848 1746.0
<none> 39685 1747.1
- highIPI 1 41349 1754.0
Step: AIC=1745.97
Age ~ highIPI
Df Deviance AIC
<none> 39848 1746.0
- highIPI 1 41606 1753.3
`height` was translated to `width`.
file saved to /tmp/Rtmpdf4qgP/continuousLASSO2plusLASSO2plus_varaibleSelection.pdf
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/tmp/Rtmcsv4qgP/continuousLASSO2plusLASSO2plus_varaibleSelection.csv': No such file or directory
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: LASSO2plus ... write.csv -> eval.parent -> eval -> eval -> <Anonymous> -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc