Last updated on 2024-11-09 02:49:14 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| relMix | 1 | 2 | 10 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 10
Version: 1.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
createDatamatrix.Rd: FamiliasLocus
relMix.Rd: FamiliasPedigree, FamiliasLocus, Familias,
FamiliasPosterior
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘relMix-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: relMix
> ### Title: Relationship inference based on mixtures
> ### Aliases: relMix
>
> ### ** Examples
>
> #Example 1: paternity trio with mixture of mother and child
> #Define alleles and frequencies
> alleles <- 1:2
> afreq <- c(0.4,0.6)
> #Define pedigrees
> persons <- c("CH","MO","AF")
> ped1 <- Familias::FamiliasPedigree(id=persons, dadid=c("AF",NA, NA), momid=c("MO", NA,NA),
+ sex=c("male", "female", "male"))
> ped2 <- Familias::FamiliasPedigree(id=c(persons, "TF"), dadid=c("TF", NA, NA,NA),
+ momid=c("MO", NA, NA,NA), sex=c("male", "female", "male", "male"))
> pedigrees <- list(isFather = ped1, unrelated=ped2)
> #Create locus object
> locus <- Familias::FamiliasLocus(frequencies=afreq,name="M1",
+ allelenames= alleles)
> #Known genotypes of alleged father and mother
> gAF <- c(1,1)
> gMO <- c(1,1)
> #Mixture alleles
> R <- c(1,2)
> datamatrix <- createDatamatrix(locus,knownGenos=list(AF=gAF,MO=gMO),idsU=c("CH"))
> #Define dropout and drop-in values
> d <- 0.1
> di <- 0.05
> res <- relMix(pedigrees, locus, R, datamatrix, ids=c("MO","CH"),
+ D=list(c(0,0),c(d,d^2)),di=di, kinship=0)
*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-clang